Deinococcus puniceus: SU48_00270
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Entry
SU48_00270 CDS
T04339
Name
(GenBank) RNA 2',3'-cyclic phosphate--5'-hydroxyl ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dpu
Deinococcus puniceus
Brite
KEGG Orthology (KO) [BR:
dpu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpu03016
]
SU48_00270
Enzymes [BR:
dpu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SU48_00270
Transfer RNA biogenesis [BR:
dpu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SU48_00270
Prokaryotic type
tRNA splicing ligases
SU48_00270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANE42454
UniProt:
A0A172T672
LinkDB
All DBs
Position
complement(59604..61010)
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AA seq
468 aa
AA seq
DB search
MNGKQITKLGFERKAIGLALAAASLREGAGLSREEILGELRGVQANPDAFLGGVYDALAA
ELIAVRGVQEARASSDLRPAPLPYPVWGADLIDPGAHTQMDVAMRLPISRAGALMPDAHV
GYGLPIGGVLATENAVIPYGVGVDIGCSMMLSVLPLPSGALKTEEAKALLMRHTRFGAGV
GFEKRDREDHAVLHEDTWDALPLLGHLHEKAINQIGTSGSGNHFAEFGTFTLAAADPELG
LEAGDYLALLSHSGSRGFGAQVANHFTRLAQDLHPTLDKSAQKLAWLRLDTEEGQAYWLA
MNLAGRYALANHDLIHTRLARALGETPLLRVSNSHNLAWKQQVDGKELIVHRKGATPAAA
GQLGLIPGSMADPGFLVRGRGNPAALASASHGAGRQLGRKAAINALAKKDVQAYLERHGI
TLIGGGIDEAPQAYKRIEDVIARQTDLVDVLGQFMPKVVRMDTGNEDV
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaacgggaagcaaattaccaaacttggatttgaacgcaaagcgattggcttggcactg
gccgccgcgagcttacgcgaaggcgcgggcctcagccgcgaagagattttaggcgagttg
cgcggcgtgcaggccaaccccgatgccttcttgggcggcgtgtacgacgcgttggccgcc
gaactgatcgcggtgcgcggcgtgcaggaagcgcgggcgtccagcgacctgcggcccgca
cccttgccctacccggtgtggggcgcagacctgatcgaccccggcgcacacacccagatg
gacgtggcgatgcgcctccccatttcgcgggccggggcgctgatgcccgacgcacacgtg
ggctacggcctgcccatcggcggcgtactggcaactgaaaatgctgtgattccgtatggc
gtgggcgtggatatcggctgctccatgatgctgagcgtgctgcccttgcccagtggcgca
ctgaaaaccgaagaagccaaagccctgctgatgcgccatacccgcttcggcgcgggcgtg
ggtttcgagaagcgtgaccgtgaagaccacgccgtgctgcacgaagacacgtgggacgcc
ctccccctcttgggccacctgcacgagaaggccatcaaccagatcggcacgagcggcagc
gggaaccacttcgcagagttcgggacattcacgctcgcggcggctgacccggagctgggc
ttagaggcgggcgactatctggccctgctgtctcacagcggctcgcggggcttcggggcg
caggtggccaaccactttacgcggctggcacaggacttgcaccctacactggacaagagt
gcccagaaactggcctggctccggctggacaccgaggaaggtcaggcctactggctcgcc
atgaatctggctggccgctacgccctcgccaaccacgacctgattcatacccggctggcc
cgcgcactgggcgaaaccccgctgctgcgcgtcagcaacagccacaacttggcttggaaa
cagcaggtagacggcaaggaactgatcgtgcaccgcaagggcgcgacccccgccgccgcc
ggacaactgggcctgattcccggcagcatggccgaccccggtttcttggtgcgtgggcgc
ggcaatccggcagcgttggcgagtgccagccacggcgcaggccgtcagctagggcgcaaa
gccgccatcaacgcccttgccaaaaaagacgtgcaggcctacttggagcgtcacggcatc
accctgatcggcggcggcatagacgaagcgccgcaagcctacaagcgaattgaagacgtg
attgcccgccaaaccgatttggtggatgtgctgggccagttcatgcccaaagtggtgcgg
atggacacaggcaatgaggacgtttga
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