Dryobates pubescens (Downy woodpecker): 104296268
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Entry
104296268 CDS
T08526
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104296268 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104296268 (PATL1)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104296268 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
104296268 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104296268
NCBI-ProteinID:
XP_009894354
LinkDB
All DBs
Position
Unknown
AA seq
756 aa
AA seq
DB search
MAGSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKPVA
NREQDGPSGEDSDLLGEPEDTLAERLTRLVIDSELEDPAIMQAVQTKVPAQQPGGLNSSI
WHSLAVLRRIRGPLLTQEMPSVSVLDYALPQRPPQTREEERDPSERALPRRSSSPVIGSP
PVRAVPIGTPPKQAAVPNFNQQILCPKPVHIRATMPQRYPAPYGERMSPNQLCNVPNSSL
LGHPFPHSVSPVLTHLQRAQLLGGAQVKPGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPASGFRAFFGAPPAPSQPQPPPGPAGSHLQSLRPQSQMFRPDTTHLHPQHRRLLH
QRQQQNRNQHRSLNGSVGDRGGHRSNQQERKDPYANLMLQREKDWVSKIQMMQLQSTDPY
LDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTV
SSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLLSL
EGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVARILPFLSPE
QAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQSAT
ASAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDANTELMQDNQWTELMLMATRELLR
IPQAALAKPVSTPSNLISLFSRYVDQQKLNLLETKL
NT seq
2270 nt
NT seq
+upstream
nt +downstream
nt
atggctgggtccctggaggactgtccactggatgaggatgaagatgccttccaggccctg
ggggaggaagatgaagatatcgaccagttcaacgacgacacgttcggagctggggctgtc
gacgacgactggcaggaggcacacgagcggctggcagagctggaggacaaaccagtggcc
aacagggaacaggatggacccagtggggaggattcagacctgctgggtgagcctgaggac
accttggctgaacgtctgaccaggctggtcatcgacagcgagctggaggaccctgccatc
atgcaggccgtgcagaccaaggtccctgctcagcagcctggagggttgaattccagcatc
tggcacagcttggcagtcctgcggcggatccgggggcctcttctcactcaggagatgccc
tctgtgtccgtgctggactatgctctgcctcagagaccccctcaaacccgagaggaggag
cgggacccatcggagcgggcgctgccgcgccgctcgtcgtcccctgtcatcgggagcccc
ccggtccgggctgttcccatcggcacccctcccaagcaggctgcagtgcccaacttcaac
cagcagatcctatgtccaaagcctgtccacatccgagctacgatgcctcagcgctaccct
gctccctatggcgagaggatgtcccccaaccagctctgcaacgtcccgaactcctccctt
ttgggccaccccttccctcacagcgtctctcccgtcctcacccacctgcagagagcacag
ctgcttggaggagcccaggtaaagcccggccgaatgtcccccagccagtttgctcgtgtc
tctgggctggttgggagcccccttccctctgtcaatcccaagctgctccaaggcagagtt
gggcagatgatgtctcctgccagcgggtttcgtgccttcttcggggctcccccggccccc
tcgcagccgcagcccccgccgggccccgccggctcccacctgcagagcctcaggccccag
tcccagatgttccggccggataccacccacctgcacccccagcaccgccggctcctgcac
cagcggcagcagcagaaccgaaaccagcaccggagcctcaacggctcagttggggaccgg
ggaggccaccggagcaaccagcaggagcgcaaagacccctatgccaacctcatgctgcaa
agggagaaggattgggtgtccaagatccagatgatgcagctccagagcactgacccctac
ctagatgactattactaccagaattacttccagaagctggagaagttggcagcagcagag
gaagtgcacggggatggtcccaagaaggaacgcactaaactcatcacgcctcaggtggcc
aagctggagcacacctacaagccagtgcagttcgagggctcgctgggcaagctcacggtc
tccagcgtcaacaacccgcgcaagatgatcgacgcggtggtgacctcccgcagcgaggat
gatgagacgaaggagaagcaggttcgagacaagaggcgccagaccctcgtcacgatcgag
aagacctacagcctcctcctggatgtggaggactatgagagacgctacctcctgagcctg
gaaggcgagcggccggccctgatgggcgagaggaagcagaagatctgcgacatgtacgac
aatctgagggggaaggcacctgggcaggacaggccaagcgatgaccacttcatgcagatc
atgtgcatccgcaaagggaagcgcctggtggcccggatcctccccttcctctcacctgaa
caagcagctgatgtcctcatggcaacagccaggaacttgcccttcctcatcaagaaggat
gctcaggatgaggtgctgccctgcctgttgaggcccttctcacacgttctctaccacctc
cctttggggaccgtcaccagccttgtgcagcagctaacgaacctacctcagagcgcgacc
gcgtcggcgcccaccaacctgcacctcactgctgtgctccaaaacaagttcggtctgtcc
ctgctgtacttggtcctgagccgtggggaggagctgcagagctcggatgccaacacggag
ctgatgcaggacaaccagtggactgagctgatgctgatggcaacccgggagctgctgcgc
atccctcaggctgccctggccaagcctgtgtccaccccttccaacctgatctccctcttc
tctcgctacgttgaccagcagaagctcaacctgctggagacaaaattgca
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