Dryobates pubescens (Downy woodpecker): 104296734
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Entry
104296734 CDS
T08526
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03030
DNA replication
dpub03410
Base excision repair
dpub03420
Nucleotide excision repair
dpub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104296734 (RFC1)
03410 Base excision repair
104296734 (RFC1)
03420 Nucleotide excision repair
104296734 (RFC1)
03430 Mismatch repair
104296734 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dpub03032
]
104296734 (RFC1)
03400 DNA repair and recombination proteins [BR:
dpub03400
]
104296734 (RFC1)
DNA replication proteins [BR:
dpub03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104296734 (RFC1)
DNA repair and recombination proteins [BR:
dpub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104296734 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
Rad17
BRCT_2
AAA_5
AAA_16
RuvB_N
AAA_30
AAA_17
AAA_18
RNA_helicase
AAA_33
nSTAND3
AAA_7
Zeta_toxin
AAA_19
TIP49
NTPase_1
Nexin_C
Motif
Other DBs
NCBI-GeneID:
104296734
NCBI-ProteinID:
XP_009894880
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MDADIRRFFGVVPPGKRQECETVKKNEKVKNGEEPLSGKKKGKETKVNNSPSEDDWKPKR
INKKRRIIYDSDSEEEVQPVQKSKKPPGIKAAAPKLGKVLKRDPVVYISETDEEDDFVGK
RISLKPKENRTAAIACPETAAVKKEEVKPQPKSKPVSPVKQTPTSALDYFGTSSVQRSEK
KLVSSKRKEPSQSRDSTLDDEAIARQLQIEEDSELERQLHEDEEFAKTLAMLDETPQKKK
ARRDSGGEQTVLSIKSSPSETNRRKQTEGGKAANLTGEAEDCSPKQQTKPEQSKGSRSSP
QSAGKTARESTDKPLPLKPSSKLVSLKQKAETAEQETGAQSSLSKEKAASGKEERTTPKK
EKISPKKAKSVSPEDSEKKRSNYEAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITG
VLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQAKCEKASALGTKVIDEDGLF
DLIRTMPGKKSKYELAAETEAKKVESRPERTPQKAVAGKKNSSPLKREANNKKLKSSPEK
GDTDKSVKKETTAVRKLMDFKWQAGEKEEATKPKENLDSETNEGTERLLWVDKYKPVSLK
AIIGQQGEQSCANKLLRWLRNWHKNSSEDAQAKSSKTGGKDDGTGFKAALLSGPPGVGKT
TTASLVCKELGYSYVELNASDTRSKSSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIM
DEVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKMRSLVHYCFDLRFQRPRLEQ
IKGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASR
AKKDIRLGPFDVVRKVFATGEETSRMSLMDKSDLFFHDYSLAPLFVQENYVHVKPAAAGG
NLKKHLMLLSRTADSICDGDLVDRQIRNKQTWNLLPTQAIYASVLPGELMRGYMSQFPVF
PSWLGKFSSAGKHDRIIQELAMHMSLRTQTCKRTVNMEYLPYLRDALVQPLKDLGADGVQ
EAIAFMDSYCLMKEDIENIMEISTWGGNPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLNS
VKTTRRQSASAMAFELSEDLNVEENKSDEDEQDTVESDAMIKQKKAKPSKPPKREKTEET
TKKEGKRKEKTRH
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagatatccggagattctttggggtcgtacctcctggaaaacgacaagaatgt
gagactgtgaaaaagaatgagaaagttaaaaatggtgaagaacctctgagtgggaagaaa
aagggaaaggagaccaaggtgaataattcacccagtgaagatgactggaaaccaaagcgg
ataaacaagaaaagaagaataatctatgattcagactcggaagaggaggtgcagccagtg
caaaaatccaagaagccacctgggataaaagcagctgctccaaaacttggtaaagtttta
aagcgggatcctgttgtttatatttcggagacagatgaagaagatgattttgtcggtaaa
agaatttccctgaagcccaaggaaaacaggacagcggcgattgcttgtccagaaacagct
gcagtgaaaaaggaagaagtcaaaccacaacctaaaagcaaaccagtatctccagtgaaa
cagactcctacctcagcactggattactttgggacaagtagtgtccagcgatcagaaaag
aaactggtatccagtaaaaggaaagaaccttcacaaagcagagacagcacactagatgat
gaggccattgctaggcaactgcagattgaagaggactcagagttggagagacagctgcat
gaggatgaagaatttgctaaaactttggccatgttggatgaaacaccccagaagaaaaag
gctcggagagattcaggaggggagcagacagtgctgagcatcaagagcagtcccagtgag
acaaacagacgcaagcagacagaaggaggcaaagcagcaaacttgacaggtgaagcagag
gattgcagtccaaagcaacaaacgaagcctgaacaatccaagggctctcgttcatcccca
caatctgctggtaaaacagcaagagagtcgacagataagcccttgcctttgaaacccagc
tctaagctggtgtctctgaaacagaaagcagagactgctgaacaggaaacaggagctcaa
agttcattatctaaagaaaaagctgcttcagggaaagaagagaggacaacaccaaagaag
gagaaaatttctccaaagaaggccaagtctgtaagtcctgaagactctgaaaagaagcga
agcaattatgaagcctaccgaagcttccttaatcgtgaggggccaaaagctctgggttcc
aaagagatacctcagggagctgaaaactgcttggaaggcctgacctttgtcattacaggc
gttctggagtgtattgagagagatgaggccaagtctctgatcgagcggtacggaggcaaa
gtaactggcaacgtcagcaagaagacaaactatctggtcatggggcgagactgtggccag
gcgaagtgtgaaaaggcatcagctttagggacaaaagttattgatgaggatgggctgttt
gaccttattcgaacgatgccaggcaagaagtccaaatatgagctggcagctgaaacagag
gcaaagaaagtagaatcaagacctgaaaggacaccacagaaagctgtagctggaaagaaa
aattcaagccccttaaaaagggaagccaataataaaaagttaaagtcttctcctgaaaaa
ggagatactgacaaatctgtcaagaaggaaaccactgctgttcgaaagctgatggacttc
aaatggcaggctggagagaaggaagaagccaccaaacccaaggagaacttggattctgag
acaaatgaaggaacagagagattgctatgggtagataaatacaagcctgtgtctcttaag
gcaataattggacagcagggtgagcaaagctgtgccaacaaactgctccgatggctcagg
aattggcacaagaattcctcggaagatgcacaagcaaagagcagtaaaactggaggcaaa
gatgatggtactggttttaaagcagcattactttctggtcctcctggagttggtaaaact
actacagcttctttggtttgtaaggagctggggtacagctatgtggagctgaatgccagt
gacactcgcagtaagagcagcctcaaggaagtagttgctgagtctctgaacaacaccagc
atcaaagacttctgctctggcacatcctcatcagttagcgggaagcatgtattgatcatg
gatgaagtggatggtatggcaggcaatgaagacagaggagggattcaggagctgattggt
ttgattaggcacacaaagatccccatcatctgcatgtgtaatgatcgaaaccatcccaaa
atgcgttccttggtccactactgctttgatcttcgcttccagagacctcgtctagagcag
atcaagggggccatgatgtctattgcttttaaagaaggcttaaaaattccaccacctgct
atgcaagagatcatcctggcagcaaatcaggatatcagacaggttttacataaccttaac
atgtggtgtgcaaaagataaatcactgacttacgatgaggctaaaacagatgccagcaga
gccaaaaaggatatcagactgggaccttttgatgttgttcggaaggtttttgctacagga
gaagaaacttctcgtatgtctctcatggacaagtcagatctcttcttccacgattattcc
ctagcacctctctttgtccaggagaactatgtacatgtgaaaccagctgctgctggagga
aacctgaagaagcacttgatgctcttgagcagaacagctgatagtatatgtgatggtgat
ctagtggacagacagattcgtaacaagcaaacctggaaccttcttccaacacaggctatt
tatgcaagtgttctccctggggagctgatgagaggttacatgtcccagtttcctgtcttt
cccagctggctggggaaattttcatctgcaggcaaacacgaccgaatcattcaggaattg
gcgatgcacatgagcctcaggacccagacctgcaagaggacagtgaacatggagtatttg
ccgtacttgcgggatgcacttgtccagcccttgaaggaccttggagcagatggtgtacaa
gaagctatagcattcatggactcctactgcttgatgaaagaagatattgaaaatatcatg
gaaatcagcacgtggggaggcaaccccagccctttttcaaagctggatcccaaggtcaaa
gcagctttcacacgtgcctacaacaaagaggctcatctgactccttattccctgaactct
gtcaagacaaccaggaggcagtcagcatctgccatggcctttgaactgagtgaagacctg
aatgtggaagagaacaaatctgatgaggatgagcaagatactgttgaaagtgatgcaatg
attaagcaaaaaaaggcaaagccttccaagccaccaaagagagagaaaactgaagaaaca
acaaaaaaagaagggaaaaggaaagagaaaacaagacattaa
DBGET
integrated database retrieval system
