Dryobates pubescens (Downy woodpecker): 104296758
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Entry
104296758 CDS
T08526
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104296758 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104296758 (SKIV2L2)
03041 Spliceosome [BR:
dpub03041
]
104296758 (SKIV2L2)
03009 Ribosome biogenesis [BR:
dpub03009
]
104296758 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
dpub03016
]
104296758 (SKIV2L2)
Enzymes [BR:
dpub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104296758 (SKIV2L2)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104296758 (SKIV2L2)
Spliceosome [BR:
dpub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104296758 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
104296758 (SKIV2L2)
Ribosome biogenesis [BR:
dpub03009
]
Eukaryotic type
Pre-60S particles
Helicases
104296758 (SKIV2L2)
Transfer RNA biogenesis [BR:
dpub03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104296758 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104296758
NCBI-ProteinID:
XP_009894906
UniProt:
A0A093GC85
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MADAFGDELFDVFEGNSGAKKSKAGATEGSKRPGKRLEEKPSADAIGKSKREADFNSTED
ALLGKKSKLENVISDDVNLADLMPRVKVQAVDTVEGCTHEVALPADEDFTGLKPRTGKAA
KEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALRDKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRP
TPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSN
VFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSD
EDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPA
RTVLFTSASKFDGKDFRWITSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLK
GSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVSNLEGQYN
KIAIPNEENVVIYYKIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGVDFGWGV
VVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVPVLV
HLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKV
IQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQMDELKC
RKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATALLSCFV
FQENSSEMPKLTEQLAGPLRQMQECAKRIARVSAEAKLEIDEENYLNSFRPNLMDVVYTW
ANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggcgacgaacttttcgacgtgttcgagggcaactccggcgctaag
aagagcaaagcaggcgccaccgagggctccaagagaccgggaaaacgattggaagagaag
ccttcagcagatgcaataggaaagtccaaaagagaagctgacttcaatagtactgaggat
gctcttttggggaagaagtcaaaattggaaaacgttatatcagatgatgttaatttggca
gatctgatgcctcgagtaaaggtgcaagctgtggacactgttgagggctgtacacatgag
gttgcacttccagcagatgaggacttcacaggtctgaagccaagaactggaaaagctgca
aaggaatatccatttattcttgatgccttccagagagaagctattctttgtgtagataat
aaccagtctgtgttggtgtcagctcatacatcagctggtaaaactgtttgtgcagagtat
gcaattgccctggctttgagggataaacagcgtgtgatatttacaagtcccattaaagct
ttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggatgttggtttgatgact
ggggatgtcaccattaatcctacagcttcctgtctagtcatgacaactgagattttgaga
agtatgctctacagaggttctgaggttatgcgagaagttgcatgggttatttttgatgaa
atccactacatgagagactcagaacgtggtgtggtttgggaagagacaattattttgctc
cctgacaatgttcattatgtgttcctttctgcaactattccaaatgctcgtcagtttgct
gaatggatctgccatcttcacaagcagccttgccacgtgatttacactgactatcgaccc
actccactgcagcattacatattcccagcaggaggagatggactccatctggttgttgat
gaaaatggagatttcagagaagacaattttaatacggcaatgcaagtgcttagagatgca
ggagacttagctaaaggagatcagaaaggcaggaaaggaggaacaaaaggtccttcaaat
gtttttaagattgtgaagatgatcatggaaaggaatttccagcctgtgattattttcagc
ttcagtaagaaggactgtgaggcctatgcacttcagatgacaaagttagatttcaataca
gatgaagaaaaaaagatggttgaagaagtgttcaataatgcaattgattgtctgtcagat
gaagacaaaaagcttcctcaggttgagcacgtgcttcctcttctgaagcgaggaattgga
atccatcatggtggtctgctccctatcttaaaagaaaccatagaaattcttttctctgag
ggcctaataaaggccttatttgcaacagagacttttgctatgggaattaatatgccagcc
aggactgtactatttacaagtgccagcaaatttgatggaaaagactttcgatggataacc
tcaggtgaatatattcaaatgtcaggtcgtgcaggacgccgaggtatggatgacagaggg
atagtaattcttatggtggatgaaaaaatgagtccaacaattggcaagcagcttttgaag
ggttcagctgatcctttaaacagcgcattccacctaacatacaacatggtcttgaacttg
cttcgagtagaggaaattaaccctgaatacatgttagaaaagtccttctatcagttccag
cattacagaactattccagaaatagtagagcgagtgagtaatttggaaggacagtacaac
aaaatagcaattcccaatgaagaaaatgtggtcatatactacaaaatccgtcagcagctt
gcaaaactgggtaaagacattgaagaatatattcacaagccaaagtattgcttgcccttt
ctacagccaggaagactggtaaaggtcaagaacgaaggtgttgactttggatggggagtg
gttgttaatttctctaagaaatcaaatgttaagcctaattctggcgagttggacccactc
tatgtagtcgaagtgctcctgcactgcagcaaagagagtctgaaaaattctgctactgag
gctgcaaagccagccagacctgatgagaaaggagagatgcaggtggttcctgttttggta
catcttctctcagccatcagtagtgtccgactttacataccgaaagacctaagacctatt
gacaacaggcaaagtgtgttaaaatccatacaagaagtacagaaacggtttcctgatgga
gtacccttactagaccctattgatgacatgggcatcaaagatcaaggactgaaaaaagta
atccaaaaagtagaggcgtttgagcataggatgtattcacatcctctacacaatgatccc
aacttggaaactgtgtacaaactctgtgaaaaaaaagcacagattgctatggatattaaa
gcagcaaagcgagaactgaaaaaagccagaacggtcttgcaaatggatgaactcaaatgc
cgcaagcgtgttttgaggaggctggggtttgccacctcttcagatgtcattgagatgaaa
ggaagagtcgcttgtgaaatcagcagtgctgatgaactactcctgacagaaatgatgttc
aatggtctcttcaatgacttaacggcagaacaggcaactgctctgctaagctgttttgta
tttcaagagaattccagtgaaatgccaaaattgacagagcagttggcaggaccactccgg
caaatgcaggagtgtgcaaaaagaattgccagggtgtctgcagaggcaaagctggaaatc
gacgaagagaattacttaaactctttcagacccaacctaatggatgttgtatacacatgg
gcaaacggagccaactttgctcacatatgcaaaatgactgatgtctttgaagggagcata
attcgttgcatgaggaggctggaggagctgcttcggcagatgtgccaggctgccaaagcc
attggaaacacagagctggaaaataagtttgcagaggggattactaaaatcaagagagac
attgtgtttgctgcaagcctttacctgtag
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integrated database retrieval system
