Dryobates pubescens (Downy woodpecker): 104296951
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Entry
104296951 CDS
T08526
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104296951 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpub03041
]
104296951 (PRPF40A)
Spliceosome [BR:
dpub03041
]
Complex A
U1 snRNP components
U1 related factors
104296951 (PRPF40A)
Complex B
104296951 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
104296951
NCBI-ProteinID:
XP_009895119
LinkDB
All DBs
Position
Unknown
AA seq
831 aa
AA seq
DB search
MGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMMM
SHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQTTHPVVCAAQQTTTTTSSVNEEHSKQKST
WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDAGKPYYYNSQTK
ESRWAKPKELEDLEAMIKAEENSGGTATAEEQGQGASAPAGQEQSGEAAANATDDSSKQE
ASGDAASKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPR
YSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAE
QMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYC
TTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQ
RKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVED
LKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDAGNIKLAFNSLLEK
AEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLES
ERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKKRQR
SESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIEREKDKKDRERDSEKDR
ARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgggacacccaggcatgccacattatccccccatgggaatgcaccctatgggtcagaga
cccccaaatatgccaccggttccacacggtatgatgcctcagatgatgccccccatggga
ggaccaccaatggggcagatgcctggaatgatgcagtcagtaatgcctggaatgatgatg
tcccacatgtcccaagctgctatgcagcctacagttccaccaggagtgaacagcatggat
gcacaagtaggtgtcacacctcctggaactcagacaacgcaccccgtcgtttgcgctgcc
cagcaaaccaccaccaccaccagctctgttaatgaggagcactctaaacagaaatctacg
tggacggaacacaaatcaccagatggaaggacgtattactataacactgaaacaaagcag
tccacgtgggagaagccagatgacctcaaaacacctgctgagcaattgctgtccaagtgt
ccctggaaagagtataaatctgatgctggaaagccctactattacaattcccaaacaaag
gaatcacgctgggcaaaacccaaagagcttgaggatcttgaagcaatgataaaagctgaa
gaaaacagcggtggcacagccacggccgaggagcagggacaaggggcttctgcacctgct
gggcaggagcagagcggagaagcagcagccaacgcaacagacgactcttccaagcaggag
gcctcaggagatgctgcttcaaagaaagaggatgatgatgcccagcctgttaagaagacc
tatacctggaataccaaggaagaagccaagcaggcatttaaagagctgctgaaagaaaag
agagtgccatccaatgcttcttgggagcaagcaatgaaaatgatcattaatgatcccaga
tacagtgctttggctaaattaagtgaaaaaaagcaagcttttaatgcttacaaagttcag
acagagaaagaagagaaggaagaagcgagatcaaaatacaaagaagctaaagaatccttc
cagcgtttccttgaaaaccatgagaagatgacctccacaacaagatacaaaaaagctgag
cagatgtttggggagatggaagtctggaacgcgatatcggagcgtgaccgcctcgagatc
tatgaggatgtcttgttttttctgtctaagaaggagaaggaacaagccaaacagctacga
aagaggaactgggaagctttgaagaacatactggataacatggccaatgtcacttactgc
accacttggtctgaggcccagcagtacctgatggacaatcctacctttgcagaagatgaa
gagctgcagaacatggataaggaggatgcactgatttgttttgaggaacacatcagggcc
ttggaaaaagaagaggaagaagagaagcagaagagtttgctgagggagagaaggagacag
cggaaaaacagagaatcttttcagctgtttctggatgaactgcatgagcatggccagcta
cattccatgtcctcttggatggagttgtacccaaccataagctctgacatcaggttcacc
aacatgctgggtcaaccgggatccacagcacttgatcttttcaagttctatgttgaagat
ttgaaagcacgttaccacgatgagaagaagataatcaaagacatcttaaaggacaaagga
tttgtggttgaggtgaatacttcttttgaggactttgttactgtcatcagctcaactaaa
agggctacaactctcgatgcaggaaacatcaagctggcttttaacagtctgctggaaaag
gcagaagcccgggaaagagagagggaaaaggaagaagctcgcaaaatgaagcggaaagag
tcggccttcaagagtatgctgaagcaagctactcctccaatcgagttggatgctgtctgg
gaagatatcagggatagatttgtgaaagaaccagcatttgaagacatcactttggagtct
gaaaggaaaagaatatttaaagatttcatgcatgtcctagagcacgagtgccagcaccat
cactcaaagaacaagaagcattcgaagaagtctaaaaagcaccacaggaagcgctcgcgg
tctcgctcgggctcagagtctgaggatgatgacagccactccaagaagaaaaggcaacgt
tcagagtcaagatcggtttctgagcgttcttccagcgcagagtccgagaggagttacaag
aagtcaaaaaaacacaagaaaaagagcaagaagagaagacacaagtctgattcaccagaa
tctgatattgaaagagaaaaagacaagaaggatcgagagagggatagtgaaaaggataga
gcaagacagagatctgagtcaaaacataaatcacctactaaaaaacgacctggaaaggac
tctgggaactgggacacttctggcagcgagctgagcgagggagagctggaaaaacagagg
aggactcttttggaacaactggatgaagatcaatga
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