Dryobates pubescens (Downy woodpecker): 104296963
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Entry
104296963 CDS
T08526
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104296963 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpub03041
]
104296963 (PRPF4)
Spliceosome [BR:
dpub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104296963 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_IFT122_1st
WD40_like
WD_LRWD1
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
104296963
NCBI-ProteinID:
XP_009895131
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
MALLPQINISHTISGSHEATKSKPAEESDTPPAKRAPIFYGSLEEKERERLAKGESGLLG
KEGMKAAIEAGNINISSGEVFDLEDHLSERQAEVLAEFERRKRARQINILRNILSVVGTD
ALKKTRKDDDRSKKSKEEYQQTWYHEGPRSLKTARLWLANYSLPRAVKRLEEARLFKEIP
EATRTSQRQELHKSLRSLNNFCSQIGDDRPLSYCHFSPSSKLLATACWSGLCKLWSVPDC
NLVHTLRGHSTNVGAIVFHPKATVSLDKKDVNLASCAADGSVKLWSLESDEPVADIEGHS
MRVARVMWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVYDIAFHTDGSLAGTG
GLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHVATGSGDNTCKVWDLRQRKCIY
TIPAHQNLVTGVKFEQDTTERELAPSWHPPLRCRH
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggccttgttgccccaaattaacatctcacatacaatttcagggtctcacgaggccacc
aagagcaagcctgctgaagagagtgatactcccccagccaagagagctcccatcttctat
ggcagcctggaggagaaggagagggagagactggcaaaaggagaatcaggactgctggga
aaggaagggatgaaggcagccatcgaggctggcaacatcaacataagcagtggggaggtg
ttcgacctggaggaccacctgagcgagcggcaggcggaggtgctggcggagttcgagcgg
cggaagcgcgcgcggcagatcaacatactcaggaacatcctctccgtggttggcacagat
gccctgaagaagaccaggaaggacgatgacaggtccaagaagtccaaggaagagtatcag
cagacctggtaccacgaagggccacgcagcctgaaaacagcaaggctgtggcttgccaac
tactccctccccagggcagtgaagaggttggaggaggccaggctcttcaaggagatccca
gaggcaaccaggacatcccagaggcaggagctgcacaaatccctgcggtccctgaacaac
ttctgcagtcagatcggggacgaccgcccgctctcctactgccacttcagccccagctcc
aagctgctggccacagcctgctggagtgggctgtgcaagctctggtccgtgcctgactgc
aacctggttcacaccttacgaggacacagcaccaacgtgggagccatagttttccatccc
aaagccactgtctccctggacaagaaggatgtcaacctggcctcgtgtgcagctgatggg
tctgtcaagctctggagccttgagagcgacgagccggtggcagacatcgagggccacagc
atgcgggtggcgcgcgtgatgtggcacccctccggcaggttcctgggcaccacctgctat
gaccactcctggcgcctgtgggacctggaagcccaggaggagatcctgcaccaggagggg
cacagcaagggggtctacgacatcgccttccacaccgacggctcgctggcgggcaccggg
ggcctggatgccttcggccgcgtgtgggacctgcgcaccgggcgctgcatcatgtttctg
gagggccacctgaaggagatctatggcatcaacttctcccccaacgggtaccacgtggcg
acgggcagcggggacaacacctgcaaggtgtgggacctgcgccagaggaagtgcatctac
accatccctgcccaccagaacctggtcaccggcgtcaagttcgagcaggacaccactgaa
agggagctggctccttcctggcacccacccctcagatgcagacattga
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