Dryobates pubescens (Downy woodpecker): 104297464
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Entry
104297464 CDS
T08526
Symbol
CACNA1H
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub04010
MAPK signaling pathway
dpub04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104297464 (CACNA1H)
04020 Calcium signaling pathway
104297464 (CACNA1H)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dpub04040
]
104297464 (CACNA1H)
Ion channels [BR:
dpub04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
104297464 (CACNA1H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
DUF3043
Motif
Other DBs
NCBI-GeneID:
104297464
NCBI-ProteinID:
XP_009895704
LinkDB
All DBs
Position
Unknown
AA seq
1772 aa
AA seq
DB search
FEHISMLVILLNCVTLGMFQPCEDVECQSERCTILEAFDDFIFAFFAVEMVIKMVALGIF
GQKCYLGDTWNRLDFFIVMAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVT
LLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFIDRNFVMTYNLTFLQPYYRT
DEAEENPFICSSHRENGMQKCSNPPSRKEYKVECTLSIDSYTPSLYCCYWVITLEGWVDI
MYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRENQLMQEQRARYLSN
DRTIASFSGAALRRTPSRLSGLSVACPLPSPPPGTLTCELQDCPFCASLLEDPELAFSDS
DSCDSDGNGVYEFTQDLRHGDHRDQLQQQRGRRRRKKRKARERNKVAQLWKAFGSKLKRI
VESKYFNRGIMIAILVNTLSMGIEYHEQPDELTNALEISNIVFTSMFALEMLLKLLAFGL
FGYIKNPYNIFDGIIVVISVWEIIGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLM
KTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQ
ILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSDT
DEDKTSANFDDDFEKLKDMRATEMKMYSLAVTPNGHLEGRGSMPPPIIMRTAATPMPTPK
CSPHMDSVHTFVDSRRGSNASLDPVSHDQKSLSSLRSSPCANWGTSSNWGSRRSSWNSLG
RAPSLKKKNQSGERESLLSGEGKGSTDDDSDDAKSSTVSRHSLHRRAESLDCRSSLDLPE
LLQLPGLRPALGPAAPLPAEHQDCNGKMLHVPGEFLLRVEGHKEDAADYEDDGEDSYCYR
IRKALEPYKPQWCKTHEDWALYVFSPQNRFRVMCQKVIAHKMFDHVVLVFIFLNCITIAL
ERPDIDPHSTVVALGFFSGENTYLQSSWNVLDGVLVFVSIIDIIVSMASAGGAKILGVLR
VLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKF
YYCDGPDVKNITTKADCTNAHYRWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDA
VGIDQQPIQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEK
RLRRLEKKRRSKEMYLSEAQRRPYYADYSPARKYIHSLCTSHYLDLFITFIIGVNVITMS
MEHYNQPKSLDEALKYCNYVFTIVFVFEAVLKLVAFGFRRFFKDRWNQLDLAIVLLSIVG
ITLEEIEMNAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLL
FMLLFFIYAALGVELFGKLDCSEENPCEGLSRHATFTNFGMAFLTLFRVSTGDNWNGIMK
DTLRECTREDKHCLSYLPVISPVYFVTFVLIAQFVLVNVVVAVLMKHLEESNKEAKEDAE
MDAEIELEMSRGATTSGSSGSRAGAVAPERRAPCRSQEAVKPEPATQQGAAASLRPQEPQ
NLLTVRKISVSRMHSLPNDSYMFRPVMPAKAPFPLHEVEMETYPCKAQRGSITSIRSQPV
GTCSSLRVPAESLQLAVRSPGHEGRHRWKVLPPQLTPRSPALNKLLCRQVRHINSSAKDW
AGEHSDAGSRSTSPFLSPAPSPVALKNCSTSSPSGGSSSKEKDLKKFYSIDTKGFLNKPS
WADDQRRHSIEICPSLGDGHCGFRGPPRGKKR
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
tttgagcacatcagcatgctggtgatcctgctcaactgtgtcaccctgggcatgttccag
ccctgcgaggacgtggagtgccagtcggagcgctgcaccatcctggaggcttttgacgac
ttcatcttcgctttctttgcggtggagatggtgatcaagatggtagccctgggcatcttc
gggcagaagtgttacctgggcgacacctggaaccgcctggacttcttcatcgtcatggca
ggcatgatggagtattccctggacggacacaacgtgagcctctccgccatccgcaccgtc
cgggtcctgcggccgctgcgagccatcaacagggtcccaagtatgaggatactcgtcacc
ctgctcctggacactctgcctatgttaggcaacgtcctcctcctgtgcttctttgtcttc
ttcatcttcgggattgtcggcgtgcagctctgggcagggctgctcaggaacaggtgtttc
atagacaggaactttgtaatgacgtacaacctcaccttcctgcagccctactaccgcacg
gacgaggcggaggagaaccccttcatctgctcctcgcaccgggagaacggcatgcagaag
tgctccaacccccccagcaggaaggagtacaaggtggagtgcaccctgagcatagactcc
tacaccccgagcttgtactgctgctactgggtcataaccctggaaggatgggttgacatc
atgtattatgtgatggatgcacactctttttacaattttatatactttatattgcttatc
atagtgggttccttcttcatgatcaacttgtgcctggtggtgatcgccacgcagttctcg
gagacgaagcagcgggagaaccagctgatgcaggagcagcgggcgcgctacctctccaac
gacaggaccatcgccagcttctccggggcggcgctgcggcggacgcccagccggctgtcg
gggctgagcgtggcctgcccgctgcccagcccaccccctggcaccctgacctgcgagctg
caggactgccccttctgcgccagcctcctggaggaccccgagctggccttcagcgactcc
gacagctgcgactccgacggcaacggcgtctacgagttcacgcaggacctgcggcacggc
gaccacagggaccagctgcagcagcagcggggcaggaggaggaggaagaagaggaaagcc
agggagaggaacaaggtcgcccagctgtggaaggccttcggcagcaagctgaagaggatc
gtggagagcaaatacttcaaccggggcatcatgatcgccatcctcgtcaacacgctgagc
atgggcatcgagtaccacgagcagccagacgagctgaccaacgccctggagatcagcaac
atcgtcttcaccagcatgtttgccctggagatgctcctgaagctccttgcctttggcctc
tttggctacatcaagaacccatacaacatctttgacgggatcatcgttgtcatcagcgtg
tgggagatcattgggcagtcggatggaggcctctcggtgctgcgaaccttccggctgctg
cgggtgctgaagctggtgcggttcatgcctgccctccgccgccagctcgtggtcctgatg
aagacaatggacaacgtggccaccttctgcatgctgctcatgctcttcatcttcatcttc
agcattcttggcatgcatctttttggatgcaagttcagcctgaaaactgatacaggagac
acagttccagacagaaagaattttgattccttactttgggccattgtgacagtctttcag
atcctcactcaagaggactggaacgtggtcctgtacaatgggatggcctctacctcctca
tgggcagcactctactttgtggccctgatgacctttggcaattatgtgctcttcaacctt
ctcgttgccattctggtcgaaggcttccaggcagagggtgatgccaacaggtcagacaca
gatgaggacaagacctctgccaactttgatgacgactttgagaagctaaaggacatgcga
gcaacagagatgaagatgtactcccttgctgtcacccccaacggccacctggagggcagg
ggcagcatgccacctcccattatcatgcgcaccgctgccacaccgatgcccacaccgaag
tgttccccacacatggactcagtgcacacctttgtggactcaaggagggggagtaatgca
tccctggaccccgtgagccacgaccagaagtctttgtccagcctccgcagctccccttgc
gccaactggggcaccagcagcaactgggggagccggcgctcgagctggaacagcctgggc
agagcccccagcctcaagaagaagaaccagtccggggagagggagtccctgctctccggg
gaggggaagggcagcaccgacgacgactccgacgacgccaagtccagcacggtcagcagg
cactcgctgcaccgccgcgcggagtccctggactgccgcagctccctcgaccttcccgag
ctgctccagctgcccggcctgcgccccgcgctcggccccgccgcccccctgcccgccgag
caccaggactgcaacggcaaaatgctccacgtgcccggggagttcctcctgcgtgtcgag
ggccacaaggaggacgccgccgactacgaggacgacggcgaggacagttactgctaccgg
atccgcaaggcgctggagccctacaagccgcagtggtgcaagactcacgaggactgggcc
ctctacgtgttctccccacagaacaggttccgagtgatgtgccagaaggtcattgcccac
aaaatgtttgaccacgtggtgctggtcttcatatttctcaactgcatcactatagccctg
gagcggccagacatagacccccacagcacggtggtagctcttggctttttctctggggag
aacacctatctgcaaagcagctggaatgtcctggatggagtcttggtctttgtttccatc
attgacatcattgtctccatggcctcagcaggaggagccaagatcctgggtgtccttcgt
gttttgaggcttctgcggaccttgaggcctctccgagtcatcagcagagccccaggtctg
aagctggtggtggaaaccttgatctcatccttgaggcctattgggaatattgttctcatc
tgctgtgctttcttcatcatctttggaattctgggagtccagctttttaaaggcaagttc
tactactgtgatgggcctgacgtgaagaacatcaccaccaaggcagactgcaccaacgct
cactaccgatgggtgcgcaggaagtacaacttcgacaacctggggcaggccctcatgtcc
ttgtttgtcctctcctccaaggatggctgggtgaacatcatgtatgatggcctggatgct
gtgggtattgaccaacagcccatccagaaccataacccttggatgcttctctacttcatc
tccttcctgctcatcgtcagcttcttcgtgctcaacatgtttgtgggggtggtggtggag
aacttccacaagtgccggcagcaccaggaggcggaggaggcgcggcggcgcgaggagaag
cggctgaggcgcctggagaaaaagcgcaggagtaaggagatgtacctgtctgaagcccag
cgcaggccttactacgccgactactccccggcgcgcaagtacatccacagcctctgcacc
agccactacctcgacctcttcatcaccttcatcatcggcgtcaacgtcatcaccatgtcc
atggagcactacaaccagcccaagtccctggatgaagccctgaagtactgcaactacgtg
ttcaccatcgtctttgtgttcgaggccgtgctgaagctggtggcctttggctttcgaagg
ttctttaaggacaggtggaaccagctggatttggccatagtcctcttatcaattgtgggg
atcaccctggaggaaattgagatgaacgctgctctgcccatcaaccccacaatcatccgc
atcatgagggtgctgaggatagccagagtgttgaaactgcttaaaatggccactgggatg
cgagctctgctggacacagtggtacaagcactgccccaggtagggaaccttggcctactt
tttatgctcctgttttttatctatgctgccctgggagtggaattgtttggcaagctggac
tgcagtgaggaaaacccttgtgagggtctcagccggcatgcaaccttcaccaacttcggc
atggcctttctcaccctcttcagggtgtccacaggggacaactggaatggtatcatgaag
gacaccctgcgggagtgcaccagggaggacaagcactgcctcagctacctgcctgtcatc
tctcctgtctacttcgtcaccttcgtcctcatcgcgcagttcgtcctggtcaacgtggtg
gtggcagtgctgatgaagcacttggaggagagcaacaaggaggccaaggaggacgcagag
atggacgctgagatcgagctggagatgtccagaggagcgaccacctcgggcagcagtggc
agccgggctggggctgtggccccggagcgcagagccccctgcaggagccaggaggccgtg
aagccggagccggcgacgcagcagggcgctgcagcctccctgaggccacaggagcctcag
aacctgctgaccgtgcgcaagatctccgtgtcccgcatgcactccctgcccaacgacagc
tacatgttccggccagtgatgccagccaaagcccccttccccctccatgaggtggagatg
gaaacctatccctgcaaagcccaaagagggtccatcacttccatccgctcccagcccgtg
ggcacctgcagctccctgagggtgccggcagagtccctgcagctggcagtgcgttccccc
ggccacgagggccggcaccgctggaaggtccttcccccccagctcacacctcgatcccct
gctctcaacaagctgctctgcagacaggttcgccacatcaacagctcggccaaagactgg
gcaggggagcactcggatgccggcagccgctcgacttcgcccttcctctccccggccccg
tctccggtggccctcaagaactgcagcacaagcagcccctccgggggcagcagcagcaag
gagaaggacttgaagaagttttacagcatcgacaccaagggcttcctcaacaagcccagc
tgggcggacgaccaaaggcggcactccatcgagatctgcccctccctcggcgacgggcac
tgcggctttcggggcccgccccggggaaagaagcgg
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