Dryobates pubescens (Downy woodpecker): 104297495
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Entry
104297495 CDS
T08526
Symbol
VPS13A
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dpub04131
]
104297495 (VPS13A)
Membrane trafficking [BR:
dpub04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
104297495 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Spo16_N
DUF5764
Motif
Other DBs
NCBI-GeneID:
104297495
NCBI-ProteinID:
XP_009895734
LinkDB
All DBs
Position
Unknown
AA seq
3258 aa
AA seq
DB search
MGSVLNCIKKQLAAPYFASRYTKGCFGSQVCCLMVVADFRTTEEIQAASLPAGQAYQQGS
VPLRCGGSFFLAVGLGYNARLAAVSMQLCKGLCRLLGAVALKNLEIKENALSQLDVPFKV
KAGHIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEAKQLLEARQRELQR
IEEAKQKIADQDKVKEEKQDTFVEKLVTQVIKNLQVKISSIHIRYEDDITNRNNPLSFGI
SLQNLSLQTSDKNWNPCLHDETAKLFYKLVRLDNLFAYWNVKSEMFYHGGCEESLVNLKQ
GVASHNVIPEGYDFVFRPISAKAKLLMNPRSDVDFSSPKMDLDVNLQDITVEFNKPQYFS
VMELLESIDMMTRNLPYRKYRPDVPIHNNAKTWWKYVIYGILEVNVQPKLQMWSWEHIWH
HRKQVKNYKEMYKTKITSKKPNEEILKLLEEFEKALDIFNITLARQQAEVEATKAGLKIY
RPGVKQDDENSGGWFSWIWGWSGEKKDQQKQEIKGSRLEELMTLEEKAKLYAAIGYSETA
VDPTLPKSYEAMKFSVKLLSMSISIRENNQAPELVKFALTGLSTVFTQRPGAQAIRFETE
ITSLEVTGMSREKCTPCLLSSRTIYSDKSTSLLSIMFETNPLDEKADQRLRIESQPLEIV
YDAMTINSLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLKINLM
ASYIIVPQKGFYDSTSNLLLLDLGSLKMKSKSRSDLSELKVGQSTIEDIMSRAYDSFDIQ
LSSIQLLYSKHDENWQEARKLKYSSQHILQPLDVKVEFSRAMVVTDARMPKFKLSGQLPL
LSIQISDQKVTSILELVDSIPKPESAPVTSSPPKIPEAAISPVLSAAHLSQSVLPVLDLH
SFAESESEEEFYDALSSPVEDMPFFEAASGSLKQAGSTRRKKLHKQESLKNMTEFQLRFE
VAEVLIKLCHLTANIETPVLQLEVVGLGTELKLRTFDMTANAFLREVCLLCPVYMDDNEK
PVYIITTLDNVEDDLLTLEYIKADINGPELKTVYQNVLQKIKVNFSSLDIHLHTEALLNA
MNYLNNLLPKQETKVAEEPVPERTEEKKDVLKKLTSKKSKYEDVIDLNICADLSCLRIFV
REKKHRIAEIHIEGLDSQVIMKKAATEVTAKLKNIIVVDSDEMALYKKALYITGNEVFNF
RMVSYVSATDGAAYTNMDVVDNRVYLTVGCIQVVFVNKFVSCILAFINNFQAAKEALTEA
TVQAAEKAATGVKELAERSSRLALDINIKAPVVIVPQSAMSANVLVADLGLITVKNRFFI
AKTKTRYNLPPVIDSMTVKLSELKLYRSCYEQGSLQTEVQLLQPLNLEVAVERNLAAAWY
NEVPDIEISGRLKPMNLILSQEDITTILRTLNENIGGSSGASTSLPELKDSTSHSSDMHS
TSQHSAGVTVVTSAVVELHSPVKIKTTLKLDFRFDSLTLVLYSPNSKQATNLDQRHDLLK
LAEFKLVLMSAAVKMSSDGSMNASVKLANCTLDDKRQSIQKATPRMVEMKHGFEKKVMMD
ITYKQGRDGTALDVIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLKQSLPLKEQAP
VQPVSTMEMNIVVKNPEIVFVADLTRSDAPALVVTTQCEVFIKNSPERYSMTAAVKEIQI
KACPFLPEKRKGNVTTVLQPCDLFFEVKQSGTNPQAADLTIKSLTIKVSPIILNTVITIT
SALYQTAETTEEDVSQIPPDLWNKKDIKNLKMWFLEESKENEDKNPTAELVPTGESLKIN
IESVFLTLEAGVGHRTVPMLLAKSSFLGEVKNWSTLINLRSYLELEVHYFNEMFGVWEPL
LEPLEVEKTDFFKPWILEIKMKKKAKKALVESDAEEEHYKVPEYKTVINVSSKDQLNITL
SKCGLQMLSNLGTAFAEAASQTSDIFKKDRAPFVIMNSLGLPITVSPSDSFSVLNVEFGA
KIFHLKDGENLNMEFVRTKNESDQFTAMTTLSSKRFYIQIYPHNHSTVEKIPLTKVGRCI
YRVRHEESGVERSIVCQIDTVEGSKMITIRSPVQIRNHFSIPLNIFEEGRCLGTASPENE
FNIPLSSYRSILSLQPLANEDGADGEYDMCEGITFDEIMKNVDSLLQRKCQSVRSSCHSL
IINIVPVKDTLTSSFFTEDQWDFPYVVHLWPSVLLHNLLPYQITYSAEGDGTKCTTLQEG
CSAQIHNAVLDQTKLDLQLLNYLDQNWKSEYHIKTNLPEISFTTFYCVTELDKTELDIAV
HVTYTTGQMVIAVHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFFQNNK
VQLMVTDSELSDQFSLDTVGSHGSVKCKSHKKEYQVGVTINNSSFNITRIVTFTPFFMIS
NRSKYTLEVAEEGKEKWIPIVLQQCIPFWPENDANKLLVRVENSDLPPKKINFDKQENCL
LLHLDNKLGGITVDVNLTEHSTVITFSNYHDGAAPFLLINHTKEEIIEYGQSSLSELEDC
LQPNKAVLYTWADPAGSRKLKWRCGNRTEEITPKEDKMEILTLDYRKVVYLVSFFEGLQR
IVLITEDENVFKLTYESVKAELAEQEIVLSLQDVGISLVNNCTKQEVSYIGITSSDVVWE
TKPKKKSRWRPMSVKQTDKLEQEFKDYSELTPSENKIIELESNVLVCLTPNGMNMKIQQP
NEIPIRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYPIKPPKSITLD
SAPKPFTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLYALVEFFTQTDVPSDQE
LELFKKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDSNKEERKNE
LIHLKXLNXLLKSIGATLTDVQDIVFKLAFFELSYHFCTRQQLQSAVTRHYSKQAIKQMY
VLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALVGGAVGGL
AGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSGFVSGITG
IVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADSSEDVISL
RPPRFFSEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDLLMVTKSGVLF
VTKGTFGQLTCEWQYTYDEFTKEPFIIDGRRLRIEAKERVKSVFHAKEFGKIINFKSPED
AKWILSKLEEARENQPKL
NT seq
9777 nt
NT seq
+upstream
nt +downstream
nt
atgggcagtgttctgaattgcatcaagaagcagctggctgctccttactttgcaagcagg
tacacaaagggctgctttggctcacaggtctgctgcctcatggttgtagcagactttaga
actactgaagagattcaggcagcttctctcccagctggccaggcttaccagcagggctca
gtccctttaagatgtggtggcagcttcttcctagcagtgggactgggatacaatgcaagg
ctggctgcagtttcaatgcagctctgcaaaggactctgcaggcttctgggtgctgttgca
ctgaagaatcttgaaataaaagaaaatgcactgagtcagctggatgtgccatttaaggtt
aaagcaggacatattggtcaacttaacctacagattccttggcaaaacctttatactcaa
cctgttgaggcagttcttgatggagtttatttgcttattgtacccacagccagcataaaa
tatgatgctgaaaaagaagccaagcagctcttggaagcaagacaaagagagttgcaaagg
atagaggaagcaaagcagaaaatagctgaccaagataaagtaaaagaagagaaacaagac
acgtttgtagaaaaactagtcactcaggtcatcaaaaatcttcaggtgaaaatttccagc
atccatattcgctacgaagatgatatcacgaatcggaataaccccttgtcgttcggcatc
tcacttcagaatctaagtttgcagacctcagataaaaattggaatccatgtttacatgat
gaaactgccaaattgttttacaagcttgtacgactggataacctttttgcttactggaat
gtgaaatcagagatgttctaccatggtggttgtgaggagtcattggttaacttaaaacag
ggagttgccagccacaatgtgattccagaaggttatgattttgtattccgcccaatttca
gctaaagccaaactccttatgaatcctcgatctgatgttgacttttcatcaccgaaaatg
gatttagatgtaaatttacaggatataactgttgaattcaataagccccagtacttcagt
gttatggagcttcttgagtctattgacatgatgactcgaaatctgccatacaggaagtac
agacctgatgttccaatacataacaatgccaagacatggtggaaatatgttatttatggt
atccttgaagtaaatgttcaacctaagctccaaatgtggtcatgggaacatatttggcac
catagaaagcaagtgaagaactataaagagatgtataaaacaaagataacgtcaaaaaaa
cctaatgaagaaatattaaagttgttggaggaattcgaaaaggccttggatatttttaac
atcactctggcaaggcaacaagcagaagttgaggcaacaaaggctggattgaaaatctac
agaccaggagtaaaacaagatgatgaaaattctggtggctggtttagctggatatggggt
tggtcaggtgaaaaaaaggatcagcagaagcaagaaataaaaggttcaaggctggaagag
ctgatgacacttgaagagaaggctaaactttatgcagcaattggatatagtgaaacagct
gtggatccaacgcttccaaaatcatatgaagccatgaagttctctgtgaagttactaagc
atgtctatatcaataagagaaaacaaccaagctcctgagctggtaaaatttgcattaact
ggcttgagtacagtatttacccagcgaccaggtgcacaagcaataagatttgaaacagaa
attacctcacttgaagttacaggcatgtcccgagaaaagtgtacaccctgtctcctttct
tctcgaacaatctattcagacaagagtacctcactcttaagcataatgtttgagactaat
cctttggatgagaaagcagatcagaggcttcgaatagaatcacagccactggaaatagta
tatgatgcaatgacaataaatagcttagtggatttcttcaggcctccaaaagatgtacat
ttagaacaattgacatcagctactttgatgaaacttgaagaattccgagaaaaaacatca
acaggcttgttgtatgttattgaaactcagaaagttcttgacctcaaaataaatctaatg
gcctcatacatcattgttccacaaaaaggattctatgactctacatcaaacttactactt
ctggatcttggtagtcttaagatgaaaagcaaaagtcgttctgacttatcagaactcaaa
gtaggacaaagcactattgaagatataatgtcaagagcttatgacagttttgatatccag
ctcagcagtatacagttactgtacagcaagcatgatgagaattggcaagaggctcggaag
ctgaaatactcatctcaacatatcttgcagcccttggatgtaaaagtggaatttagcagg
gctatggttgttactgatgcaagaatgcccaagttcaaactgtctgggcagctgccttta
ctttctatccaaatatcggaccagaaggtgacaagtatcttggagctagttgatagcatt
cccaagccagaaagtgctcctgttaccagttctcctccaaaaatacctgaggctgcaata
tctcctgtgctctcagcagcacatttgtcacaaagtgttcttcctgtactggatcttcat
tcatttgctgagtcagaatcagaagaagaattttatgatgctctcagcagtcctgtagaa
gacatgccattttttgaagctgcatctggttccctcaagcaagctggtagtacaaggcga
aaaaaattacataaacaagaatctttgaaaaatatgacagaattccaactgaggtttgaa
gtagctgaggtcttaattaagttatgccatttaactgctaatattgaaacacctgtgctg
cagcttgaggttgtaggtctaggcacagaacttaaattaagaacatttgacatgactgca
aatgccttccttcgtgaagtttgtctgctgtgtccagtgtatatggatgataatgagaag
ccagtttacataattactactttggacaatgtagaagatgatcttctcactctggagtac
ataaaggctgatattaatggaccggaattgaaaactgtctatcagaacgtattacagaaa
ataaaggtgaacttttcatctctagatattcatttgcatactgaagctctactgaatgct
atgaattatctgaataatcttctacccaaacaagaaactaaagttgcagaagaaccagtc
cctgaaagaacagaggagaagaaggatgttcttaagaaattaacatcaaaaaagtcaaag
tatgaagatgttattgacctcaatatctgtgcagatttatcctgtttacgtatctttgtt
agagagaaaaaacacagaatagctgaaattcacattgaaggtctggatagccaagtgatc
atgaagaaagcagcaacagaagtgactgcaaagttaaaaaacatcattgttgtggattct
gatgagatggcactgtataaaaaggctctttacatcacaggaaatgaagtcttcaacttc
agaatggtatcgtatgtcagtgctacagatggtgcggcatatacaaatatggatgttgtt
gacaatcgtgtttacctaactgtagggtgtattcaagtagtttttgtcaacaagtttgtt
tcatgtattttggcttttataaataacttccaagctgccaaggaggctcttactgaggca
actgttcaagcagcagaaaaagcagctacaggtgtaaaagagctagcagagcgtagttcc
cgtttggcactagacatcaatattaaagcccctgttgtgatagttccacagtcagcaatg
tctgcaaatgtcctggtggctgatcttggtctcatcaccgtgaaaaaccgcttctttatt
gctaaaacaaaaacacggtataacctcccacctgtcattgactctatgacagtgaaactg
agtgaattgaagttatacagatcgtgctatgaacagggttcattgcaaactgaagtacag
ttgctgcagccactcaatctggaagtagctgttgaacgaaatttagctgcggcatggtat
aatgaagttcctgacattgaaatctctggcagactcaagcctatgaatctaattctcagt
caggaagatattaccacaatattgaggactctaaacgaaaatattggtggaagctctggt
gcatcaacatctttaccagaactaaaagattcaactagccatagcagtgatatgcatagt
acttcacaacactctgcaggtgtaactgttgtaacatcagctgtggtggaattgcattca
cctgtgaaaataaaaacaacactgaaactggacttccgattcgactctctgactttagta
ttgtatagtccaaattcaaaacaggccacaaatttggatcagagacatgaccttttgaag
cttgcagagtttaagttagttttaatgtcagctgctgtcaaaatgtcatcagatggatca
atgaatgcatcagtcaaactagcaaactgtacattagatgataaaagacaatcaatccag
aaggctacaccaaggatggtggaaatgaaacatggatttgaaaagaaagttatgatggat
ataacctataagcaggggagagatggcactgctcttgatgttattgttcaagagatatac
ctatgtgcaagcatggagtttctacttactgttgcagatatattcctaaaagctaatgca
gaaagtgctgctgcacagagaaatctcaaacagtccttaccgttaaaggagcaagcacct
gtgcagcctgtatctacaatggaaatgaacattgttgttaaaaatccagagattgtgttt
gtggctgatttaacaagaagtgatgctcctgcattggtggttacaacacagtgtgaagtc
ttcattaaaaatagccctgaaagatatagcatgacagctgctgttaaagagatacaaata
aaagcatgcccatttcttccagaaaaaaggaaagggaacgttactacggtattacagcct
tgtgacctcttctttgaggtgaaacagtcaggtacaaatccacaggcagctgatctaacg
attaaatctctaacaataaaagtttcaccaataatcctaaacacggtaataactattaca
tcagccctttaccaaactgcagaaacaacagaagaagatgttagtcaaattcctccagac
ctgtggaataagaaggatataaaaaatttaaaaatgtggtttctggaagagtcaaaggaa
aatgaagataaaaatccaactgctgaactagttcctacaggagagtcattgaaaataaat
atagaatctgtcttcctaacacttgaagctggagttgggcaccgaactgtaccaatgctt
ttagccaagtcctcatttctgggagaagtcaaaaactggagtacactaatcaacctacgt
tcttatcttgagctagaggtacactattttaatgagatgtttggggtatgggaacctttg
cttgaaccactagaagttgagaagactgattttttcaaaccatggattcttgaaatcaag
atgaagaaaaaagccaaaaaagcattagttgaatctgatgcagaagaagaacattacaaa
gttccagaatataaaacagtaataaatgtgtcctcaaaagaccagctgaacattacactc
tccaaatgtgggctacaaatgttaagtaacttgggcacggcatttgctgaggcagctagt
caaacttcagacatcttcaaaaaagaccgagcaccatttgtaataatgaattctttagga
cttcccatcactgtctcacctagtgattcatttagtgtcctaaatgttgaatttggagca
aaaatatttcatttaaaagatggagaaaatttaaatatggaatttgtcagaactaaaaat
gagagtgaccagttcacagcaatgacaactctgagtagcaagaggttttatattcagatc
tatcctcataatcattccactgtggaaaagattccattgacaaaagtgggtcgatgtatt
tacagagtaaggcatgaggaatcaggtgttgagaggtctattgtctgccaaattgatact
gttgaaggaagcaagatgataactatacgttctcctgttcagataaggaatcatttttca
attccactgaatatttttgaggaaggaagatgtttgggaactgcttctccagaaaatgaa
tttaacataccattgtcttcttacagatccatactgagtttgcagcctctagccaatgaa
gatggagcagatggagaatacgatatgtgtgaaggaattacttttgatgaaattatgaaa
aatgttgacagtttattacaaaggaagtgccagtctgtgaggtcaagttgccattcactg
atcatcaatattgttcctgtaaaagacacgttgacatcttcgtttttcacagaagatcaa
tgggattttccttatgttgttcatttatggccttctgttcttctccacaatcttcttcct
tatcaaataacttactctgcagagggagatgggaccaagtgcaccactctacaagagggt
tgttcagcccagattcataatgcagtcttggatcaaacaaaactagatttacagttgctt
aactatcttgatcaaaattggaaaagtgagtaccatataaaaaccaatctaccagaaatc
agcttcacgacattttactgcgtcacggagttggacaagactgaactggatattgctgtc
cacgtgacctacacaactgggcaaatggttatagcagttcacagcccatactggatggta
aataaaaccggccgaatgttgcagtacaaagctgatggaattcaccgcaagcatcccccg
gattacaaaaagccactccttttttctttccagcccaaaaacttcttccaaaataacaag
gtgcaacttatggtaactgacagtgaactgtctgatcagttttctctggacactgttgga
agtcatggttctgtgaaatgcaagagtcataaaaaggaatatcaagttggtgtcaccata
aacaacagcagttttaatattactagaattgtaactttcactccattttttatgatctca
aatagaagcaagtacacattggaagttgctgaagaaggcaaggaaaagtggattcctatt
gttttgcaacagtgcattcccttttggcctgagaatgatgccaacaaactgcttgttaga
gttgaaaattctgatctccctccaaagaagataaattttgataagcaagaaaactgtctg
ctactgcatttggacaacaagcttggaggtattacggtggatgttaacctgactgaacat
tctacagtgattacgttttctaattaccatgatggtgcagctccatttctgttgataaac
catactaaagaggaaattattgaatatggacaaagctccctcagtgaactggaagactgt
cttcagccgaataaagcagtactgtatacttgggcagacccagcaggatctagaaaattg
aaatggaggtgtggaaacagaactgaggaaattaccccaaaagaagacaaaatggaaata
ctcaccctggactacagaaaagtggtctatttagtgtcattttttgaaggtttgcagcgt
attgtcctgatcactgaagatgagaatgtatttaaattgacatatgaaagtgtaaaagca
gaactagcagaacaagagattgttttgtctttgcaagatgttggaatttcattggttaat
aattgtacaaaacaagaggtgtcttacattggaattacaagttctgatgtggtttgggag
acaaagcccaagaagaaatcaagatggagaccaatgagtgttaagcagacggataaatta
gaacaagaattcaaagactacagtgagctaactccttcagaaaataagattattgagttg
gagtcaaatgttctggtatgtttaactcctaatggaatgaacatgaaaattcaacaacca
aatgagattcctatcagaaggaattatctaccagctttaaaagtagagtacagttcatct
gcacatcagaagtctttcagaattcaaatttacaggatacagatacaaaaccagattcct
ggagccatatttccctttgtgttctatcctattaaacctccaaagtccatcaccttggat
tcagcaccaaagccattcactgatgtcagtattgtcatgagaactgcaggacattcacag
atatctcatattaagtattttaaggttttgatacaagaaatggatctcagattagatctt
ggcttcctgtatgcactggttgaattctttacacagactgatgtgccaagtgaccaagag
ctagaacttttcaaaaaggatgttgaatctcttcaagaagaattgatgagtgtgtcatca
atggacacatcacagatcagcttgtatgaatactttcatatctctccaattaagttacac
ttaagcttttcgctcagtacgggtggagaagatagtaacaaggaagaaagaaagaatgaa
ttaatacacttaaagtagctcaattagttgctgaagagtataggtgccactctcacagat
gtacaagatattgtctttaagttggcattctttgaactcagttaccacttttgtactaga
caacagctccagtcagcagttacaagacattattcaaaacaggctattaaacagatgtat
gttcttattcttggccttgatgtcttgggtaatccatttggattcatcagaggcctgtct
gaaggagttgaagcgttcttctatgaaccttaccagggagccatccagggtcctgaggaa
tttatagaaggaatggcattaggacttaaggcactagtagggggagctgttggtggattg
gcaggtgctgcatcaagaatcactggtgctatggcaaaaggagtagctgcaataactatg
gatgaggattaccagcagaaaaggagagaagccatgaataaacagcctactggtctgaga
gagggtatcactcgtggtggaaaaggattagtttctggttttgtcagtggaataacagga
atagttacaaaaccaataagaggagctcagaaagaaggagcagctgggtttttcaaaggt
gttggaaaaggtttagtgggagcagtagccaggcccactggaggaatcatagacatggca
agcagcacttttcagggtattaaaaaagttgcagattcatcagaagatgtgataagcctg
cgcccacctcgcttcttcagtgaagatggagttattagaccttacagattaagagatgga
actggaagtcaaatgttacagaaaatcgaaaatggaagatttgcaaaactcagatacatt
gcacatgctatggtcaacagtacagacctgttaatggttacgaaaagtggtgtgctgttt
gtgacaaaagggacatttggacagctgacatgtgaatggcaatacacttacgatgaattt
accaaagaaccattcatcatcgatggcagaagattacgcattgaagccaaggaacgagtt
aagtctgtgttccatgcgaaagaatttggaaaaattattaattttaaaagtccagaggat
gctaagtggattctttctaaactggaagaagcgagagagaatcagccgaaattgtaa
DBGET
integrated database retrieval system
