Dryobates pubescens (Downy woodpecker): 104297900
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Entry
104297900 CDS
T08526
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104297900 (TNRC6C)
03036 Chromosome and associated proteins [BR:
dpub03036
]
104297900 (TNRC6C)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104297900 (TNRC6C)
Chromosome and associated proteins [BR:
dpub03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104297900 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
104297900
NCBI-ProteinID:
XP_009896219
LinkDB
All DBs
Position
Unknown
AA seq
1722 aa
AA seq
DB search
MATGSAQGNFTGHTKKTNGNNGANGALVQSTSNQSALGAGGANGNGNSARVWGVAAGSSS
GLAHCSASGGDGKMDNMMGDGRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVGA
GNPSSICSPVSAIGQNMGNQNGNPTGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLN
TDGPNNTNPMNSSPNPINAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGTSVSQVSGGS
GEGMGSSVWGMSPGNPATGNSNSGFSQGNGDTVNSALSAKQNGSSSAVQKEGNGASAWDS
GPPSGPGVLAWGRGGGSSGVGSSMHSGAWGHPNRSTSNGVNGEWGKPSSQHSNSDINGKG
SAGWDSSSVTSPNPAMQQGNEQMNSWAKAAASGTTASEGSNDSGGSQNEGSTGREGAGEG
RRRDKGMIDQGQVQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAW
GCAATQSSNSGGKNDGSIMNSTNTSSVSGWVNSPPAAIPTNTGWGDNNNKAPNGPGGWGE
SASSTTVNNAAAAKSGHAWSGTANQEDKSPTWGEPQKPKSQNWGDGQKSNPSWTSGGGDW
TDSSSVPGHLGDGKKNGSGWDSDSRSGSGWNDSTRSGTSGWGNGTNSKANTGTSWGESLK
SGPQQNWANKPQDNNVSNWGGAASVKQTGSGWVGGPVPAKQKENCEATGWEEPSPPSIRR
KMEIDDGTSAWGDPNYNNNKTVNMWDRNNPIIQSSTTTNTTTTSTIINTNMVEPQPSHQS
SAQPNRSPLLGPVSTGWGEMPTVHTKSEASWGEPSSPSAAVDNGTSAWGKPPSSGTGWGD
NPAESAGTYGRTNPPAAAPALCKPASKSMQEGWGSGGDEVTLSTSQWEDEEGDMWNNTAS
QESSSSCNSWGNAPKKGLQKGMKTSSKQDEAWIMNRLIKQLTDMGFPREPAEEALKSNNM
NLDQAMSALLEKKVEMDKRGMGVTDYNGMVTKPLGCRPPPISKESSMDRPTFLDKDGGLV
EEPTSSPFLPSPSLKLPLSNSALPNQTLGGIASGLGMQNLNSSRQIPSGNLGMFGNSGAA
QARTMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLSPAQLTSPINN
PQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQIQQHQR
QLAQALLMKQQPPPPHLSLHPSAGKSAMDSFSPHPQAPSLPDLQTKEQQSSPNTFAPYPL
AGLNPNMNVNNMDITGGLSVKDTSQSQSRLPQWTHPNSMDNLSSAASSLDQNSSKHGAIP
GGLSIGPPGKSSIDDSYGRYDLIQNSESPSSPPVAVPHSWSRAKTDSDKISNGSSINWPP
EFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPTSSQNATL
PSSSAWPLSASGYSSSFSSIASAPSIAGKLSDIKSTWSSGPISHTQASLSHELWKVPRNT
TAPTRPPPGLTNTKPSSTWGASPLGWTSSYSSGSAWSTDSSGRTSSWLVLRNLTPQIDGS
TLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEE
VNRFLAQGQPLPPTSSWQSNTGTNQTRLGSSSSSHGLVRNDAGHWNTPCLGGKGSSDLLW
GGVPQYSSSLWGPPSTDDGRVIGSPTPLNTLLPGDLLSGESI
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atggctacagggagtgcccaaggcaacttcactggacatacaaagaaaactaatggcaat
aatggcgccaacggagcactcgtccaaagcacttctaaccagagtgcccttggagctggc
ggagcaaacggtaacggcaactcagccagagtgtggggtgtggctgcgggctccagctct
ggcctagctcactgctctgccagtggtggggatggaaagatggacaacatgatgggagat
ggtagaagtcagaactgctggggtgcttccaactcaaatgctggcattaatcttaacctt
aaccctaatgccaatccagctgcctggcctgtacttggacatgaaggaactgtgggagca
ggcaacccttccagtatttgcagtccagtcagtgccataggtcagaacatgggcaaccag
aatgggaacccaacaggcaccttaggtgcttggggaaacttgctgccgcaagagagcaca
gaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacctcagaaccttaac
actgatggaccaaataacactaaccccatgaactcttcaccaaaccctatcaatgcaatg
cagacaaacggactgccgaactgggggatggctgttggtatgggggccatcatcccgccc
cacctgcaaggccttcctggtgctaacggaacatcagtttctcaagtcagcgggggcagt
ggtgaaggaatgggcagttcagtgtgggggatgtccccaggtaatcctgccacaggaaac
agcaattctgggttcagtcaggggaatggagacactgtgaactcagcattaagtgctaaa
caaaacggatccagcagtgctgtgcaaaaggaaggaaacggagcgagcgcgtgggattcg
gggcccccttctggtcctggggtactagcgtggggcaggggtggtggcagcagcggtgtt
gggagtagtatgcattctggagcctggggccaccccaaccgcagcaccagcaatggtgtg
aacggggagtggggcaagccctccagccagcattccaatagcgacatcaatgggaaagga
tcggcagggtgggatagctccagtgttaccagtccaaaccctgccatgcagcagggcaat
gaacaaatgaactcttgggccaaagctgcagcatctggcaccacggctagcgaaggaagt
aatgacagcggtgggagtcaaaatgaaggcagtactgggagggagggggctggagagggc
aggaggagagacaaagggatgatagaccaagggcaagttcagttgccaagaaatgacctt
gaccccagggtcctgtccaatacggggtggggacagacccctgtaaagcaaaacactgcc
tgggaatttgaagagtccccgaggtctgaacgaaagaatgacaatggaacagaggcctgg
ggttgtgcagctactcaatcttcaaactcaggggggaagaacgatgggtccatcatgaac
agtacaaatacctcttcagtatctgggtgggtcaactctccaccggcagctattccaaca
aacacaggttggggagacaataacaacaaagcaccaaatggccccgggggttggggagag
tcagcaagctctactactgttaataatgctgctgctgccaaaagcggccacgcttggagt
gggaccgcaaatcaggaggacaaatcacctacctggggtgaacctcagaaacccaaatct
caaaactggggagatggacagaaatcaaatccaagctggacttcaggaggtggagattgg
acagattcatcgtctgttcccggacacttgggtgatgggaagaagaatggatctggatgg
gattctgacagtagatcagggtctggttggaatgattccacgaggtctgggaccagtggg
tggggaaatggcacaaacagcaaggctaatacaggtacaagttggggagaatctttaaag
tcaggcccccaacaaaattgggctaacaaaccccaggacaacaatgtgagtaactgggga
ggagctgcttctgtaaaacagacggggtcagggtgggttggtgggccagtgccagccaaa
caaaaagagaactgtgaggcaactggctgggaagagccatctccaccatccattcgccgc
aagatggaaatcgatgatggtacctcagcttggggcgacccaaattacaacaacaacaag
actgtaaacatgtgggatagaaataatcctataatacagagcagtaccacaaccaacacc
accaccactagcaccattatcaacacaaacatggttgaacctcagccatcgcaccagtca
agtgcccagccgaaccggtccccgctgcttggtccagtttccacaggctggggcgaaatg
cctactgtccacacgaagagtgaagcttcttggggagagccgtcatccccttctgctgca
gttgataatggcacttcggcctgggggaagccccccagcagtggtacagggtggggagat
aatcctgccgagtcggcagggacatacggaagaacaaaccctccagctgctgccccagca
ctgtgcaaaccagcttcaaaatctatgcaagaaggctggggcagtggtggggatgaagtg
actctcagtactagtcagtgggaagatgaagaaggagatatgtggaataatactgcttca
caagagagcagctcctcctgtaattcctgggggaatgccccgaagaaaggacttcaaaag
ggcatgaagacatctagcaagcaagatgaggcctggatcatgaaccgcctgataaaacag
ctcacagacatgggcttccctagagagccagcggaagaggccttgaagagcaacaatatg
aatcttgatcaggccatgagtgctctgctggaaaagaaggtggaaatggacaagcgtgga
atgggagtgaccgactataatggaatggtcaccaaaccccttggctgccgcccaccacca
atctccaaagagtcttccatggaccgccccaccttccttgacaaggatggcggcctagtg
gaagagcccacttcttcaccatttttgccttcaccaagcctgaagctccccctttcaaac
agtgcactccctaatcagaccctgggcgggattgcctcagggctgggcatgcaaaacttg
aattcttctagacagataccgagtggcaatctgggtatgtttggcaatagcggagcagca
caagccaggaccatgcaacagccgcagcaaccgccagtgcaacctcttaattcatcccag
cctagtcttcgtgctcaagtgcctcagtttctatcccctcaggttcaagcacagcttttg
cagtttgcagcaaaaaacattggtctcagccctgcacagttaacctcgccaattaataat
cctcagcatatgacgatgttgaaccagctctatcagctgcagctggcgtaccaacgttta
caaatccagcagcagatgttacaggctcagcgtaatgtttccggacccatgagacaacag
gagcagcaagttgcacgtacaatcaataacatgcagcagcagatccagcagcaccagcgc
cagctggcccaggccctgcttatgaagcagcagcctccccctccacatctatctttgcac
ccctctgcaggcaaatcagccatggatagcttttcaccccatccccaggctcccagccta
cctgacctgcagaccaaagagcaacagtcttcaccgaacacctttgctccttaccctctt
gctggactgaacccgaacatgaatgtaaataacatggacattactggtggtttgtcagtg
aaggacacttctcagtcccagtctcgccttcctcagtggacacaccccaactcaatggat
aatctgtctagtgctgcttcttcgcttgaccagaactccagcaagcacggtgctatacct
ggaggtttaagtattggtcctccgggaaagtcctccattgatgactcttacggccggtat
gatctgattcagaacagtgaatctccctccagtccacctgtagctgttcctcacagctgg
tctcgtgccaaaactgatagtgataaaatttccaatggctccagcataaactggccacca
gagtttcacccaggagtgccatggaaaggactgcagaatattgatcctgaaaatgaccct
gatgttactcctggaagtgttccaactgggcctaccataaacaccacgatacaggatgtt
aatcgctatcttctcaagagtggagggtcatccccaacatcatctcagaatgccacgctg
ccttcatcgagtgcctggccgcttagtgcctccggctacagtagctctttcagcagcatt
gcatccgcacctagcattgcaggtaaactgtcagacatcaagtctacgtggtcctctggc
ccaatctctcacacacaagcctctctctcccatgaactgtggaaggtacccagaaacact
actgctcctacaagaccacctccaggcttaacaaacaccaagccatcatctacatggggt
gccagtcccctgggttggaccagctcttactcctctggttctgcatggagcactgacagc
tcagggagaacaagcagctggctggttctgcgaaatctcacaccccagattgatggttcc
acactgcggacactgtgtttgcaacatggccctctaataacattccacttgaacctgaca
caagggaatgctgtggtccgatacagttccaaggaagaagcagccaaggcccagaagtct
ctgcacatgtgtgtcctgggaaacactaccatcctggccgagtttgctggtgaagaagaa
gtcaaccgtttcttagcacaaggccagccactgccacccacctccagctggcagtccaac
actggaaccaaccagacacgcctgggctcctcgagcagctcccacggcttggtgcgcaat
gacgccgggcactggaacactccctgcctggggggcaaggggagcagcgacctgctgtgg
ggtggggtgcctcagtactccagcagcctttggggaccccccagcaccgacgacggcaga
gtcatcggaagcccaacacctttgaatactcttcttcccggtgatctactcagtggggag
tccatctag
DBGET
integrated database retrieval system
