Dryobates pubescens (Downy woodpecker): 104298248
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Entry
104298248 CDS
T08526
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpub03021
]
104298248 (CHD1)
03036 Chromosome and associated proteins [BR:
dpub03036
]
104298248 (CHD1)
Transcription machinery [BR:
dpub03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104298248 (CHD1)
Chromosome and associated proteins [BR:
dpub03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
104298248 (CHD1)
SLIK complex
104298248 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
Motif
Other DBs
NCBI-GeneID:
104298248
NCBI-ProteinID:
XP_009896598
LinkDB
All DBs
Position
Unknown
AA seq
1805 aa
AA seq
DB search
MNGNSDEESIRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSASTDSDSGSESGT
QSESESDTSREKKQIQAKPPKVDGSEFWKSSPSILAVQKSAVLRKQTQQQKATSSDSGSE
EDSTSSEDSADDSSSETKKKKHKDEDWQMSESGSGTGSDSESEEDREKSTCEESESDYEP
KNKVRSRKPPNRIKPKSGKKSAGLKKRHLESSGDEEEDDDDDYDKRGSRRQATVNISYKE
AEETKTDSDDLLEVCGEDVPQAEEDEFETIEKFMDSRVGRKGATGAATTIYAVEADGDPN
AGFEKLKETGEIQYLIKWKGWSHIHNTWETEETLKLQNVKGMKKLDNYKKKDQETKRWLK
NASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWE
DGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRDY
QLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTS
WQREIQTWAPQMNAVVYLGDVTSRNMIRTHEWMHPQNKRLKFNILLTTYEILLKDKSFLG
GLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEK
FSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ
YYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLI
RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRK
QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK
KQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEE
LSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVANF
SNMDEDDIELEPERNSRNWEEIIPEVHRRRIEEEERQKELEEIYMLPRMRNCAKQISFNG
SEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRETIKGFSDAEIRRFIKSYKKFGGP
LERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGPTFRI
SGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLIG
IYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARREAQR
LAGAGNSKRRKARTKKNKVIKAAKVKEEIKSDSSTQPSEKSDEDDGEDNKDEIVSVKHPH
KKIKAEKENEEKPEPDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKDIKEKREN
KVKESTQKEKEVKEEKVNEIKSESKEKNKKIPLLDTPVHITATSEPVPISEESEELDQKT
FSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQ
WRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQHTGSSVNTHVTRNPDVERLK
ENTNHDDSSRDSYSCDKYLSQYHDHHKDKHQGDAYKKSDSRKRPYSSFSNGKDHRDWDHY
KQDSRYYTDSKHRKLDDYRSRDHRSNLEGSLKDSRAHSDHRSHSDHRIHSDHRSASEYSH
HKSSRDYRYHSDWQMDHRASSSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKSTPEHTW
SSRKT
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggaatagtgatgaagaaagcataagaaacagtagtggagagtcaagccaatca
gatgatgattctggatcagcatcaggttctggatctggttcaagctctggaagcagtagt
gatggaagcagcagccagtcagccagcactgactctgactctggttcagagtcaggcact
caatcagaatcagagtctgacacttccagagagaagaaacaaattcaagctaaaccacca
aaagttgatggatctgagttttggaagtctagtccaagtatacttgctgtgcaaaagtca
gcagtgctcaggaagcaaacgcaacaacagaaggcgacctcatcagacagtggttcagaa
gaggactcaacaagtagtgaagattctgcagatgactcatccagtgaaaccaagaagaaa
aaacacaaagatgaagactggcaaatgtcagaatcaggatcaggaactggttctgattct
gaatcagaggaagacagggagaaaagtacttgtgaagagagtgaatctgactatgaacca
aaaaacaaggtcagaagccgaaaacctccaaacagaattaagccaaaaagtgggaagaaa
agtgcaggactgaaaaagaggcaccttgagtcatcaggggatgaggaggaagatgatgat
gatgattatgataagagaggatctcgtcgccaggcaacagtcaacattagttacaaagaa
gctgaagaaaccaagacagattctgatgatttgctggaagtttgtggagaagatgtccct
caagctgaagaagatgagtttgaaaccatagagaagttcatggatagccgagttggcaga
aaaggagccacaggtgctgcaaccaccatctatgcagttgaggcagatggtgacccaaat
gctgggtttgaaaagttaaaggagacaggggaaatacagtatctgatcaaatggaaaggt
tggtcacacattcataacacttgggaaactgaggaaacactcaagctacaaaatgttaaa
ggaatgaagaaactggacaattacaagaaaaaggatcaagaaacaaaacgatggctgaaa
aatgcttctccagaagatgtggaatattacaactgccagcaggaacttacagatgatcta
cataaacagtatcagatagtggaaagaataattgctcactcaaatcagaaatcagcagct
ggttatccagactactattgtaagtggcagggtctgccttattcagaatgtagctgggaa
gatggtgctctcattgccaaaaagtttcaggcacgcatcgatgagtattttagcagaaat
caatccaagacaactccctttaaggactgcaaggttctgaaacagagaccaaggtttgtt
gcactaaagaagcaaccatcttacattggaggacatgaaagtttagagttaagggattat
cagttaaatggattgaattggctagctcactcatggtgcaaagggaatagctgtattctt
gcagatgaaatgggtcttggtaaaacaatacaaaccatttcctttctgaactacctgttt
cacgaacatcaattatatgggcctttcttgctcgtcgtgccactttctactttgacatct
tggcaaagagagattcaaacttgggctcctcagatgaacgctgtagtttacttaggagat
gtaactagcagaaatatgataagaactcatgaatggatgcatccacagaacaaacgatta
aaattcaacatactactaacaacatatgaaattttgttaaaggataagtcatttcttggt
ggtctgaattgggcgttcataggagttgatgaagctcatcgtttaaaaaatgacgactct
cttctgtacaagactttaatagactttaagtctaaccatcgtcttcttattactggaacc
cctctgcaaaactccctcaaagagctttggtctttgttgcacttcatcatgccagaaaag
ttttcctcctgggaagattttgaggaagagcatggcaaagggagagagtatggttatgca
agtcttcacaaagaacttgaaccatttctcctgagaagagtaaaaaaggatgtagaaaaa
tctttacctgctaaagttgagcaaattctgaggatggaaatgagtgcattgcagaagcaa
tattacaagtggattttaaccaggaattataaagccctcagtaaaggttcaaaaggcagt
acctcaggctttttgaacatcatgatggaactcaagaagtgttgtaaccattgctacctc
attaaaccaccagatgataatgaattctataataaacaggaggccttacagcatttaata
cgtagcagcgggaaactcatccttcttgacaagctactgattcgtctgcgagaacgtggc
aacagagttttgattttctcacagatggtgaggatgcttgatatcctagcagagtatctg
aagtatcgtcagtttccttttcagagacttgatggatcaataaaaggggaattgaggaaa
caagcactggatcattttaatgcagaaggatcagaggacttctgcttcttactgtctact
agagctggaggattaggtatcaacttggcatctgctgacactgtagttatatttgattct
gactggaatccacagaatgatttgcaagcacaggctagagcacacaggattggtcagaag
aagcaggttaatatttatcggctcgtcacaaaaggatcagtagaagaagatattcttgaa
agagccaagaagaagatggtgttagatcatttagtaattcagagaatggacactacaggg
aaaactgtactacatacaggctctactccttcaagctcaacaccttttaataaggaggaa
ttatcagcaattttgaagtttggtgcagaggaactttttaaagaacctgaaggggaagaa
caggagccccaggaaatggatatagatgaaatcttgaagagggctgaaactcgggaaaac
gagccaggtccattaactgtaggagatgagttgctttcacaattcaaggtggccaacttt
tccaatatggatgaggatgatattgagttggaaccagaaagaaattcaagaaattgggaa
gaaataattccagaagtccatcggcgaagaatagaagaggaggaaagacaaaaagaactt
gaagaaatatacatgctcccaaggatgagaaactgtgcaaaacagatcagcttcaatgga
agcgaagggaggcgcagtaggagcaggagatactctggatctgatagtgattccatctca
gaaagaaaacggccaaaaaagcgtggacgaccacgaactattcctcgggaaactattaaa
gggtttagtgatgcagagatcaggcggtttatcaagagttacaagaaatttggtggccct
cttgaaaggttagatgctgtagctagagatgctgagctagttgataaatcagagacagat
cttagacgtttgggagagcttgtacataatggatgcattaaagctttaaaggacaattca
tctggacaagaaagagcaggaggtagacttgggaaagttaaaggcccaacattccgaata
tcaggagtgcaggtgaatgcaaagctagtcatctctcatgaagaagagttagcaccattg
cacaaatccattccttcagatccagaggaaagaaaacgatatgtcatcccatgccacacc
aaggctgctcattttgatatagactggggtaaggaagatgattccaatctattaataggc
atctatgaatatggttatggcagctgggaaatgataaaaatggatcctgatctcagtttg
acacagaagattttgcctgatgatccagataagaaaccccaggcaaagcaattacagact
cgtgcagactacctcattaagttactgaataaagaccttgcaaggagggaagcacaaagg
cttgctggtgcaggcaattcaaagaggaggaaagcaaggactaagaagaacaaggtgata
aaggctgcaaaagtaaaagaagaaataaaaagtgattcttcaacacagccctcagaaaaa
tctgatgaagatgatggtgaggataataaggatgagattgtttcagtgaaacatccacat
aaaaaaattaaagcagaaaaagaaaatgaagagaagcctgagccagatattggcataaag
aaagaagctgaagaaaaaagagagacaaaagaaaaggaaaataagagggatttgaaaagg
gagaaaaaagaaaaagaggataagaaagaattaaaagatattaaagaaaagagagaaaac
aaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagagaaggtaaatgaaata
aaatctgaaagtaaagaaaaaaataaaaaaattccattgttggatactccagttcatatt
actgctactagtgaaccagttcctatatcagaagaatctgaagaactggaccagaaaact
ttcagtgtgtgtaaagaaagaatgaggcctgtcaaagcagcactgaagcagctggatcgg
ccagagaagggcctctctgaaagagagcagctggaacatacgagacaatgtctaatcaaa
attggggatcacattaccgaatgtctgaaggagtacacaaatcctgaacaaattaaacag
tggagaaaaaatctctggattttcgtctctaagtttacagaatttgatgccagaaagctt
cacaagctttataaacatgccatcaaaaaacgccaagagtctcagcaacacaatgaccag
cacactggcagcagtgtgaatacacatgtaactagaaatccagatgtggaaagattgaag
gagaatacaaaccatgatgacagtagcagggacagttactcttgtgacaaatatttgtca
caataccatgatcatcacaaagataagcatcaaggagatgcttacaagaaaagtgactct
aggaaaaggccctattcatctttcagcaatggaaaagatcacagagattgggatcactac
aaacaagacagcagatactacactgatagcaaacataggaagttagatgactacaggagc
agagaccaccggtctaacctggaaggaagtttgaaagacagtcgagctcattctgatcat
cgttctcattcagaccacaggatacattcagatcaccgttccgcttcagagtacagccat
cataaatcttctagagattataggtaccactcagactggcaaatggaccacagagcttca
agtagtggcccaaggtcaccattagatcagaggtctccttatggttcaagatctccctta
ggacacagatctccatttgaacactcatcagatcacaaaagtacacctgaacatacatgg
agtagccggaaaacataa
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integrated database retrieval system
