Dryobates pubescens (Downy woodpecker): 104298252
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Entry
104298252 CDS
T08526
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104298252 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpub03041
]
104298252 (SNRNP200)
Enzymes [BR:
dpub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104298252 (SNRNP200)
Spliceosome [BR:
dpub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104298252 (SNRNP200)
Complex C
U5 SnRNP specific factors
104298252 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
104298252
NCBI-ProteinID:
XP_009896603
LinkDB
All DBs
Position
Unknown
AA seq
1939 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEVELLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQASFYDDAIVSQKKADEVLEILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLY
QLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGSH
FMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVPVEKLPKYAQAGFEGFKTL
NRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYI
APMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGG
ERTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDV
ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAETVLGNVQNAKDAVNWLGYTYLYIRMLRSPALYGISHDDLKGDPLLDQRRLDLVHTAA
LMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETMQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVVK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVE
LTIAPDFQWDEKVSRELPTPLGAPGGGGGWEVKEDQAACETQLPVSFRHLILPEKYPPPT
ELLDLQPLPVSALRNSSFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTIC
AEFAILRMLLQNSEGRCVYITPMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLL
GKGNIIISTPEKWDILSRRWKQRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISS
QIERPIRIVALSSSLSNAKDVAHXXXLPPPSPFSPLPLPSPASLSLLLLQGFNISHTQTR
LLSMAKPVYHAIMKHSPKKPVIVFVPSRKQTRLTAINILTTCASXXXXSRFLHCAEKDLV
PYLEKLNDNTLKETLVNGVGYLHEGLTAMERRVVEQLFSSGAVQVMVASRSLCWGMSIAA
HLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL
YEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSH
RHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNA
KTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLSQKVPHKLTNPKFNDPHVKTNLLLQAH
LSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDS
YLKQLPHFTSEHIKRCTDK
NT seq
5817 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgctcggagcctgcagtatgagtacaaggcgaactccaacctggtg
ctgcaagccgaccgctcgctgatcgaccgcacgcggcgcgacgagcccacgggagaggtc
ctctccttggtgggcaagctggaggggacccgcatgggggacaaggcccagaggaccaaa
ccccagatgcaggaggagagaagagccaagaggaggaagcgtgatgaggacaggcatgac
atcaacaagatgaagggttacaccctgctctcagagggcatcgatgagatggttggcatc
atctacaaacccaagaccaaggagaccagggagacctatgaggtgctgctcagcttcatc
caggcagctcttggcgaccagcccagggacatcctgtgtggggctgctgacgaggtgctg
gccgtgctgaagaacgagaagctgcgcgacaaggagcggcgcaaggaggtggagctgctg
ctggggcagaccgacgacacgcgctaccacgtgctggtcaacctgggcaagaagatcacc
gactacggcggagacaaggagatccagaacatggatgacaacatcgatgagacctatggg
gtgaacgtgcagtttgagtctgatgaggaggagggggatgaggacatctacggcgaggtg
cgggacgaggcctccgacgacgacatggaaggggacgaagccgtcgtgcgctgcaccctc
tcggccaacctggtggcttcaggtgagctgatgagttccaagaagaaggatctgcacccc
cgagacatcgacgccttctggctgcagcggcaggccagcttctacgacgacgccatcgtg
tcccagaagaaggcagatgaggtgctggagatcctcaagacggcgagcgacgaccgggag
tgtgagaaccagctggtgctgctcctgggcttcaacaccttcgacttcatcaaagtcctg
cgccagcaccgcatgatgatcctctactgcaccttgctggccagtgctcagagtgaagcg
gagaaggagaggatcatggggaagatggaggcagaccctgagctctccaagttcctgtac
cagctgcacgagacagagaaggaggatctcatcagggaggagcgttcccggcgggagcgc
gtccggcagtcccgcatggacaccgacctggagaccatggacctggaccaaggaggagag
gctctggctccacggcaggtgctggacttggaggatctggtgtttgcccagggcagtcac
ttcatggccaacaagcggtgccagctccccgacggctccttccgccggcagcgcaagggc
tacgaggaggtccacgtccccgccctgaagccaaagccctttggctctgaggagcaactg
gtccctgtggagaagctgcccaagtatgcccaggctggcttcgagggcttcaaaaccctg
aaccgcatccagagcaagctctaccgcgcggccctggagtccgacgagaacctcctgctc
tgtgcccccacgggggctgggaagacgaacgtggccctgatgtgcatgctgcgggagatc
gggaagcacatcaacatggatggcaccatcaacgtggatgacttcaagatcatctacatt
gcacccatgaggtccttggtgcaggagatggtgggcagctttgggaagcgcctggccacc
tatggcatcaacgtggctgagctgacaggggaccaccagctgtgcaaggaggagatcagt
gccacccagatcatcgtctgcaccccggagaagtgggacatcatcacccgcaagggcggc
gagcggacctacacccagctggtgcggctggtcatcctggatgagatccacctgctccac
gatgacagaggccctgtgctggagtccctggtggccagagccatccgcaacatcgagatg
acgcaggaggacgtcaggctcgtgggcctcagtgccaccctgcccaactatgaggatgtg
gccaccttcctcagagtggacccagccaagggcttgttctactttgataacagcttcaga
ccagtgcctctggagcagacctatgtgggcatcacagagaagaaggccatcaaacgcttc
cagatcatgaatgagattgtttatgagaagatcatggagcatgctggcaagaaccaggtg
ctggtgtttgtgcactccaggaaggagactgggaagactgccagggccatcagggacatg
tgtctggagaaagacaccttgggcctcttcctcagagagggctcagcctccactgaggtc
ctgaggacagaagcagagcagtgcaagaacctggagctgaaggatctccttccctacggc
ttcgccatccaccacgccggcatgactcgagtggacaggaccctggtggaggatctcttt
gctgacaaacacattcaggtgctggtctccacagccaccctggcctggggggtgaacctc
cctgcccacactgtcatcatcaagggcactcaggtttacagcccggagaagggacgctgg
actgagctgggagctttggacatccttcagatgctgggccgtgctggcaggcctcagtac
gacaccaagggcgaggggatcctcatcacctcccatggggagctacagtattacctctcc
ctgctcaaccagcagctgcccatcgagagccagatggtgtccaagctgccagacatgctc
aacgctgagaccgtgctgggcaacgtccagaatgccaaggatgctgtcaactggctgggc
tacacctacctgtacatccgcatgctgcgctccccggccctctacggcatctcccacgac
gacctcaagggagaccctctgctggaccagcgccgcctcgacctggtgcacactgcagcc
ctcatgctggacaagaacaacctggtcaagtatgacaagaagacaggcaacttccaggtg
acagagctgggccgcattgccagccactactacatcaccaacgagaccatgcagacctac
aaccagctcctgaagcccaccctcagtgaaattgagctcttcagggtcttctccctgtcc
tcagagttcaggaacatcactgtcagagaggaggagaagctggagcttcagaagctgctg
gagcgtgtccccatcccagtcaaggagagcattgaggagcccagtgccaagatcaatgtg
ctcctccaggccttcatctcccagctgaagctggaaggatttgctctcatggcagacatg
gtctacgtcacccagtctgcagggaggctgatgagagccatcttcgagatcgtcctcaac
cgcggctgggctcagctcaccgacaagaccctcaacctctgcaagatgattgacaaaagg
atgtggcagtccatgtgccctctgcgccagttcaagaagctgccagaggaggtggtgaag
aagatcgagaagaagaatttccccttcgagaggctctatgacctcaaccacaacgagatt
ggggagctgatcaggatgcccaagatggggaagaccatccacaagtacgtgcacctcttc
cccaagctggagctctccgtgcacctgcagcccatcacccgctccacgctcaaggtggag
ctcaccatcgcccctgacttccagtgggacgagaaggtgagcagggagctgcccaccccc
ctgggggcaccaggaggaggaggaggctgggaggtcaaggaagatcaggctgcctgtgag
acccagctgcctgtgtccttccgccacctgatcctgccggagaagtatcctcctcccacc
gagctgctggacctgcagcccctgcccgtgtctgcgctgcgcaacagctccttcgagagc
ctctaccaggacaagttccccttcttcaaccccatccagacccaagtgttcaacacagtc
tacaacagcgatgacaacgtgtttgtgggtgcccccacgggcagtggcaagaccatctgc
gccgagttcgccatcctgcggatgctgctgcagaactcggagggtcgctgcgtctacatc
acccccatggaggccctggctgagcaggtcttcatggactggtacgagaagttccaggag
cgcctcaacaagaaggttgtgctgctgacaggggagaccagcactgacctgaagctgctg
ggcaaaggcaacatcatcatcagcacccctgagaagtgggacatcctctccaggcgctgg
aagcagcgcaagaacgtccagaacgtcaacctcttcatcgtggatgaagtgcatctcatc
gggggggagaatgggccggtgctggaggtgatctgctcgcgcatgcgctacatctcctcg
cagatcgagcgccccatccgcatcgtggcgctcagctcctcgctctccaacgccaaggac
gtggcgcacnnnnnnnttctcccgcctccctctcccttctcccccctccctctcccttct
cccgcctccctctcccttctcctcctgcagggcttcaacatcagccacacgcagacccgg
ctgctgtccatggccaagcccgtgtaccacgccatcatgaagcactccccgaagaagccg
gtgatcgtcttcgtgccgtcccgcaagcagacccgcctgacggccatcaacattctcacc
acctgcgcctccnnnnnnnnnnggagcaggttcctgcactgtgcagagaaggacctggtg
ccatacctggagaagctgaatgacaacaccctgaaggagaccctggtgaacggggtgggc
tacctgcacgaggggctgaccgccatggagcgccgcgtggtggagcagctcttcagctcc
ggtgcagtgcaggtgatggtggcttcccgcagcctgtgctggggcatgagcatcgctgct
cacctggtgatcatcatggacactcagtactacaacggcaagatccacgcgtacgtggat
tatcctatctatgacgtgctgcagatggttggccacgccaaccgcccgctgcaggacgac
gagggcagatgtgtcatcatgtgccaaggatccaagaaggatttcttcaagaagttcctc
tatgagcccctgccagtggagtcccacctggaccactgcatgcacgaccacttcaacgcc
gagatcgtcaccaagaccatcgagaacaagcaggacgctgtggactacctgacctggacc
ttcctctaccgcaggatgactcagaaccccaactactacaacctgcagggcgtgtcccac
cggcacctctccgaccacctctcggagctggtggagcagaccctcagtgacctggagcag
tccaagtgcatcagcatcgaggatgagatggatgtggcccccctcaacctgggcatgata
gctgcctactactacatcaactacaccaccatagagctcttcagcatgtccctcaacgcc
aagaccaaggtgagagggctgattgagatcatctccaacgctgctgagtacgagaacatc
cccatcaggcaccacgaggacaacctgctgcggcagctgtcccagaaggtcccccacaag
ctgaccaaccccaagttcaacgacccccacgtcaagaccaacctcctgctgcaggctcac
ctgtcccgcatgcagctgagcgccgagctgcagtcagacaccgaagagatcctcagcaag
gccatcaggctgatccaggcctgtgtggatgtgctgtccagcaatgggtggctgagccca
gccctggctgccatggagctggcccagatggtgacccaggccatgtggtccaaggattcc
tacctcaagcagctgcctcacttcacctcggagcacatcaagcgctgcacagacaag
DBGET
integrated database retrieval system
