Dryobates pubescens (Downy woodpecker): 104298636
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Entry
104298636 CDS
T08526
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03013
Nucleocytoplasmic transport
dpub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104298636 (UPF3A)
03015 mRNA surveillance pathway
104298636 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104298636 (UPF3A)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104298636 (UPF3A)
mRNA cycle factors
P-body specific factors
104298636 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
104298636
NCBI-ProteinID:
XP_009897030
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MQVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILLF
RDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYCAD
EEKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKK
RLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELTSEKYKEKGEEADI
EENKWDKSPGSGSIKSKSSEASLKELKEKSQNDSDKEQRDLERRFREKEPERQRYRLDDG
RKHRAHCEFDKFVRRNEEELKWGKGYNQDRGKKGNYNYSFTMEAVDKLGKEDKCDDMASK
KERIRNKDRPAMQLYQPGARIRTHTGCTSKSYDCSGKSFEDALDKKYEADNSAGGGSEKS
EEGE
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtagttattcgacggcttcctccttgtctaactaaggagcaactggaggaacag
ctacatcctctacctgcccatgattattttgagttttgcactgctgatcccagcctttat
cctcatctctactcaagagcatacattaactttagaaaccctgaggacatccttcttttt
agagatcgctttgatggctatgtcttcattgataataaaggattggagtaccctgcagtg
gttgaatttgctccattccagaagatttccaaaaagaagctgaagaagaaggatgccaaa
gctgggagcattgaagatgatccggaatatagaaaatttttagagagttactgtgctgat
gaagaaaaaatctgtgccaatcctgagattcttttgggagagattgaggccaaaacaaga
gaacttattgctagaagaacaacaccccttttggaatatattaaaaatagaaaattagaa
aagcagagaatacgagaagagaaaagggaagaacgaaggcggagggaattggagaagaag
cgtctgcgagaggaagagaaaaggaaacgcagagaagaagaaagacgtaaaagaaaagaa
gtggagaagcaaaagaaaatttctgaaaaagaaataaggatcaagcttctcaagaagcct
gaaaaaggagatgaactgaccagtgaaaagtacaaagaaaaaggtgaagaagctgacatt
gaggaaaacaaatgggataaatcacctggatctgggagcataaaatccaaatcatcagaa
gcttcactaaaagaacttaaggaaaagtcacaaaatgatagtgacaaagagcaaagagat
ttggagagaagatttcgagaaaaagaacctgaaagacaaaggtatcgattggatgatggc
agaaagcatagagctcactgtgagtttgacaagtttgtgagaaggaatgaagaagagctg
aaatgggggaaaggatacaaccaagacagaggaaagaaagggaactacaactacagcttc
actatggaggcagtagacaaactgggtaaagaggacaagtgtgatgacatggcatccaaa
aaggagcgcataagaaataaggaccgcccagccatgcagttataccagccaggagctcgc
attcgaactcatacgggatgtacaagcaaaagctatgactgcagtgggaaatcttttgaa
gatgctcttgataaaaagtatgaggcagataattcagctggaggtggttctgagaagagt
gaagaaggagaataa
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