Dryobates pubescens (Downy woodpecker): 104298643 Help Entry 104298643         CDS       T08526                                  Symbol COL4A1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism dpub  Dryobates pubescens (Downy woodpecker) Pathway dpub04382   Cornified envelope formation dpub04510   Focal adhesion dpub04512   ECM-receptor interaction dpub04518   Integrin signaling dpub04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:dpub00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104298643 (COL4A1)    04518 Integrin signaling     104298643 (COL4A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     104298643 (COL4A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     104298643 (COL4A1)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     104298643 (COL4A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:dpub04147]     104298643 (COL4A1)    00536 Glycosaminoglycan binding proteins [BR:dpub00536]     104298643 (COL4A1) Exosome [BR:dpub04147]  Exosomal proteins   Exosomal proteins of other cancer cells    104298643 (COL4A1) Glycosaminoglycan binding proteins [BR:dpub00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104298643 (COL4A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  104298643 NCBI-ProteinID:  XP_009897035 LinkDB All DBs Position Unknown AA seq 1735 aa AA seqDB search MELLLRARFDKNGFAQVYQGWHRLTDSAFIIYADGLKLISVTTGKPWVKRIVRRGISEKE DTLKDLSCQDYMQTSVKVLFSERGSRQGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPG MQGPEGPPGPPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPXIPGQDGPPGAPGIPG CNGTKGERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLVPPSLLKGDKGFPGQPGLP GPPGSPGFQGAMGPQGPPGEPGPPGPPGRPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPG PAPHVKEKGSEIIRGEKGDPGEKGEQGVPGLPGSGFKGDKGEPGKPGPRGKPGKDGEPGP KGEPGLPGGFGIPGRPGEPGLKGDKGERGFPGPPGRVIDAGPIDTYGEKGDPGLAGLPGL KGQKGEKGFPGVQGIPGPPGRPLPDRVGSPGVPGERGEKGEKGSPGFPLPGPPGRDGFPG PPGLPGPPGPPGVTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGEACALCDKVG PPGLPGPQGPPGPAGFPGQSGFKGDRGLPGLDGLPGMPGPPGTPGLIGSPGAKGEPGDFT YDSILKGEKGDPGFPGQPGTPGREGRPGKDGLPGLQGPKGAPGTAGLKGERGPPGQPGFP GVRGERGFPGPPGIGAAGLPGDKGDRGFDGTPGLPGLPGAKGESGRTIPLPGPPGADGLP GPPGFPGPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPG TPGLDGLPGVPGLQGQKGEPGIGLPGPKGLPGIPGPAGIPGEKGNPGLPGLRGEQGFPGI PGQQGFRGDPGLPGLQGLQGPPGAPGMGPQGSPGPAGQPGPQGPPGFPGVKGERGFPGIP GLDMPGPKGDKGSQGQPGVPGSVGLPGLPGPQGAIGLKGSSGPKGEMGVMGTPGLPGTPG PVGDRGLPGEKGSQGSKGVVGPQGDPGVKGDKGEAGLPGKPGTMDTMDMVSLKGQKGDQG EKGDHGPTGEKGLRGDYGEPGIPGRDGEPGTPGHPGPKGDQGPPGYPGDPGVPGQKGSVG EMGLPGTPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGTGVPGAPGEKGEPGRTGS PGLSGDKGEKGSTGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGE PGEPGVPGPAGSIGQKGEPGYDGIPGADGAKGEQGVPGRGLPGFPGAKGDKGAKGDVGFP GSPGSPGIPGLKGEPGYVGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGHPGLPGPTG PPGPPGLKGDKGEQGSSGWPGTPGSPGVKGDPGFQALPGSPGLPGGVGPKGDLGPPGVPG VPGPKGSPGFPGLKGERGDQGFPGSKGLQGPPGPPGDFQLVKGDPGLPGPVGPVGLKGFP GLPGPKGQQGVTGPSGVPGPPGSPGFDGKPGQKGEAGPYGPPGPRGFPGPPGPEGLPGAM GPPGAPSVAHGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCL RKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCSVCEAP AMVIAVHSQTIQIPQCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFI ECHGRGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT NT seq 5208 nt NT seq  +upstreamnt  +downstreamnt atggagctattactgagagcaagatttgacaagaatgggtttgcacaggtttatcaggga tggcacagattgactgacagtgcttttatcatctatgctgatggcctcaagctgatcagt gtcaccactggtaaaccttgggtaaagcggattgttagaaggggcatatcagaaaaagaa gatacgttaaaggacctgtcatgtcaggactatatgcagacctctgtgaaagttttgttt tctgaaagagggtcaagacagggttgttctggttgtggaaaatgtgactgcagtggagta aaggggcaaaagggagaaagaggcttgccgggactacagggtgtgattgggtttcctgga atgcaaggacctgaagggccccctggcccaccagggcttaagggtgatactggagaacca ggattgccaggaacaaagggaacaagaggcccaccaggagcatcaggctttccaggaaac ccaggccttccnnnnattcctggacaagatggcccccctggagcacctggcattccagga tgtaacggcacgaagggtgaaagaggtccagtaggtcccccaggtttaccaggactgact gggagcataggacctccaggacctcctggaatgaagggagatccaggtgaagtgataggt cttgtacctcctagtttgctgaaaggtgataaaggctttccgggccaacctggactacct ggtccacctggaagtccaggttttcagggagcaatggggccacaaggacctccaggagaa ccaggtccccctgggccaccaggacgtccaggcgagaagggctacatgggcttgggtttt cagggtcccaaaggtgaaaagggagaacaaggggtgaggggtcctccaggccctccagga ccagcaccacatgtgaaagaaaaagggagtgaaatcataaggggagaaaagggtgatcca ggtgaaaagggtgaacagggagtcccagggttgccaggttcaggtttcaaaggagacaag ggtgaacctggaaagcctggtccacgtggaaagcctggcaaagatggcgagccaggacca aaaggagaacctggtttgcctggtggctttgggattccaggacgacctggggagcctggt ttaaagggtgataaaggtgaacgaggtttcccaggacccccaggcagagttattgatgct ggaccaatagatacctatggtgaaaaaggagaccctggacttgcaggtttgcctggactg aaaggtcaaaaaggtgaaaaaggtttccctggtgtgcaaggaatcccaggacctccaggt cgaccgcttccggacagggtaggatcacctggtgtccctggagagagaggtgaaaaaggt gaaaagggttctcctggattccctttacctggaccccctggaagagatggtttcccaggt cctccagggttgcctggcccaccaggtcctccaggcgtaacagatggaattgatcaatgc cagcagggagaacccggtgcaccaggtagtcctggacttccaggaagagatggatttcca ggagagatgggagagaaaggtgacaaaggtgaagcctgtgccttatgtgacaaagtcgga cctcctggacttccaggaccacaagggccaccaggcccagcaggttttccaggacaatcg ggtttcaagggtgacagaggtttacctggacttgatggccttccagggatgcctggaccc cccggcactccaggacttataggcagccctggggcaaaaggagaaccaggagattttact tatgattctatcctgaaaggtgaaaagggagatcctggtttcccaggacaaccaggtact cctggaagagaaggaagaccggggaaagatggattgccaggtctccagggtccaaaagga gcaccgggcacagctggcttgaaaggagaacgtggtccccctggccaacctggattccct ggagtacgtggtgaaagaggttttcctggccctcctggcataggcgctgccggattacct ggtgacaaaggagacagaggctttgatggaactccaggtttaccaggccttccaggagca aagggtgaatcaggacgaactataccacttcctggacctcctggggcagatggccttcct gggccacctggtttccctggaccccaaggtgacaaaggcaatcctgggcttccaggtaga cctggcctgccaggagaaaaaggtgctgttgggcagccaggtatagggttccctggacct ccaggacccaaaggtttccaaggtcagcctggctcacctggtctgccagggactccagga acccctggcttggacggtttgccaggtgtaccaggtttacaaggtcaaaaaggtgaacct ggtataggtctccctggccctaaaggattaccaggtatcccaggcccagctggcatccct ggagaaaagggaaatccgggactgcctggtttacggggcgagcaaggctttccaggcata cctggtcagcaaggattcagaggtgaccctggcctcccaggactgcagggcttgcaaggc cctccaggtgcaccagggatgggcccgcaggggtcaccaggacctgctgggcagccagga cctcagggaccaccaggatttcctggagtaaaaggagaaagaggatttcctggtatccca ggtctagatatgccaggtccaaaaggagataaaggcagccagggtcagcctggagtacca gggtctgtggggctacccggtctgccaggtccacagggggccattggacttaaaggatca tcaggacccaaaggagaaatgggagttatgggaactcctgggttgccaggaacacctgga ccagttggagatcgagggttgcctggtgagaaaggtagccaaggttccaaaggtgtagtt ggaccccagggagatcctggtgtcaaaggagataaaggtgaagctggtctcccaggaaaa cctggaacgatggacaccatggacatggttagtctcaaaggccaaaagggagatcaagga gaaaaaggggaccatggaccaacaggagaaaaagggttgcgtggggattatggagagcca ggaattccaggaagggatggtgaacctggtaccccaggacatccaggaccaaaaggtgat cagggccccccaggatacccaggggatccaggagttccagggcaaaaaggatcagttggt gaaatgggcttgccaggaacacctggagaaaagggtcttccaggagtaccaggttcacca ggcacaccagggttccctgggcaaaaaggtgaaaaaggagacaaaggagcaccaggtttt cctggaactggcgttccaggagctcctggtgagaagggagaaccaggaagaactggtagt ccaggtttatcaggagataagggtgaaaagggcagcacaggaattcctggaatgccaggt gctccaggtcccaaaggatcccctggcatggcaggatttccaggcaaccctggccgtcat ggagaaaagggtgaaaaaggacttcctggcttaagtggcattccgggtttaaaaggagaa ccaggtgaacctggtgtcccaggtcctgctggttccattggacagaagggtgaaccaggt tatgatgggattccaggtgcagatggtgcaaagggtgaacaaggtgttccaggtagaggt cttccaggatttcctggtgcaaaaggagataaaggtgcaaaaggtgatgtgggttttccc ggatccccgggaagtccagggatcccaggtctaaaaggagaaccaggatatgttggtcca ccaggccctaagggcagccaaggtcttccgggcctaccaggaagtgcaattgaaggccct aaaggagacagaggaccccaaggccaacctggccatccaggtttacctggtccaacaggg cccccaggacccccaggtctgaaaggggacaaaggagagcagggaagcagtggctggcct gggactcctgggagcccgggagtcaaaggtgatccgggtttccaggccctgccaggtagt cctggtttaccaggaggtgttggtccaaagggtgatctgggacctccaggtgttccaggt gttccaggtccaaaagggtctcctggtttcccaggccttaagggtgagcgaggtgatcaa ggttttcctggatctaaaggtttacaaggcccaccaggcccaccaggtgattttcaactt gttaaaggtgatcctggcttacctggccctgtaggaccagttggtcttaaaggattccca ggacttccgggtcccaaaggacagcaaggggtgacaggaccctcaggtgtacctggacca cctggtagtccagggtttgatggcaaacctgggcaaaaaggagaagctggcccttatggt cctccagggcccagaggattccctggtccacctggccctgaaggtttgcctggggctatg ggcccaccaggtgcaccatctgttgctcatggcttccttgttaccagacacagtcaaacc actgaagaaccgtcatgtccatttggaacaaggctgatttaccatggctactccttgctt tatgtacaaggcaatgaaagagcacatggccaagatctgggcacggcaggaagctgtctt cgtaaatttagtaccatgcctttcttattctgcaatatcaacaacgtgtgtaactttgca tcaaggaacgactattcctactggctctcgactcctgaacccatgccaatgagtatggct cctatcactggtgataatatcagaccattcatcagcagatgctctgtgtgtgaagctcct gctatggtaatagctgttcacagtcaaacaattcaaataccacagtgtcctgaaggctgg agttcgctttggattggttactcttttgtcatgcacaccagtgctggtgcggagggttct ggccaggccctggcgtctcctggttcctgcctagaggagtttcgaagtgctcccttcatt gaatgccatggtcggggcacctgcaattattatgcaaatgcttacagcttctggcttgcc actatagagaggaatgagatgttcaagaaaccaactccctccactttgaaagcaggggat ctacgctcaaacgttagccgttgtcaagtctgtatgagaaaaacataa

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