Dryobates pubescens (Downy woodpecker): 104298741
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Entry
104298741 CDS
T08526
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104298741 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104298741 (PARN)
Enzymes [BR:
dpub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104298741 (PARN)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104298741 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
104298741
NCBI-ProteinID:
XP_009897136
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MEVIRSNFKDTLSKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYEEKRSQANGTGSLSYISPNSAKCPVTIPDDQKKF
IEKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVNEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLNDFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTAAEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSELIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVERKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYTQSLYYCVNSFTGTSTVGKRSMSPIQEESGSDDMEERESQDPEYNQTDSFAESL
PDGKKRAKKFKKIKTEQLPAGGLTTSSTGIFEVPETW
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcagaagcaattttaaggataccctaagcaaagtatatgaagccattgaa
gagtcggatttcctggccatcgatggagaattttcagggatcagcgatgggccttctgtt
agtgcattaaccaatggctttgacactccagaagaaagatatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaa
gaaaagtatataatgaaatcatttaacttctatatttttccaaaaccctttaacagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaatcaagga
tttgattttaataaagtttttcgcaatggaattccatatttaaatcaggaagaagaaaga
cagctaagggaacagtatgaagaaaaacgttctcaggccaatggtacaggttctctgtca
tacatttctcctaattctgcaaagtgccctgtaacaattcctgatgatcagaaaaaattc
attgagaaagtagtggagcagatagaagatttattaaagaatgaagaaaatgaaagtttg
gaactggagccgtgtactggatttcagaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtattcatgttgaaactttggagtcagataagaaggagagatatattgtt
attagtaaggtgaatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaagaa
caggaggaattgaatgatgcagtaggattttccagagtcgttcacgccattgctaattct
ggcaagcttgttattgggcacaatatgctgctggatgttatgcataccatacaccagttc
tactgtcctctacctgacgacctgaatgatttcaaggaagtaacatcctgcgtctttccc
cggctattggatactaaactgatggcaagtacacaaccttttaaggagattattaataat
acatcccttgcagaactggaaaagcgtttaaaagaggttcccttcagccctcctaaagtt
gaaagtgctgaaggttttccaagttacgacacagctgctgaacaacttcatgaagcagga
tatgatgcttacattactggactgtgcttcatttccatggctaatttcttaggttcattc
ctcagtcctccaaaaaaccatgtgtctgctagatcagaactcattgaacctttttttaac
aagctctttcttatgagagtaatggacataccatatctcaatctggaaggaccagacttg
cagccaaaacgagatcatgttcttcatgtcacttttcccaaagagtggaagaccagtgac
ctttatcagcttttcagtgcctttggtaacattcaaatttcttggattgatgatacatca
gcatttgtatccctgagccagccagaacaagtacaaatagctgtaaacaccagcaggtat
gctgaaagttacaggatccagacatatgcagaatatgttgagagaaaacatgaagaaaaa
caggcaaagagaaaatgtacagaagatagttggaaggagatggaaaggaagcggttaaaa
actcaatgcacaccttacacccagagtctatactactgtgttaacagttttacaggtacc
agtacagtgggaaagagaagcatgagtcctattcaggaagaatctggttcagatgatatg
gaagagagagaaagtcaagatcctgaatataaccagacagactcatttgcagagtccctt
ccagatggtaagaagagagccaaaaagttcaaaaagatcaagacggaacaacttccagca
ggaggcctcacaaccagttccactggaatttttgaagtccctgaaacatggtag
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