Dryobates pubescens (Downy woodpecker): 104298753
Help
Entry
104298753 CDS
T08526
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104298753 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
dpub01001
]
104298753 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
dpub04054
]
104298753 (CIITA)
Enzymes [BR:
dpub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104298753 (CIITA)
Protein kinases [BR:
dpub01001
]
Serine/threonine kinases: Other
TAF1 family
104298753 (CIITA)
Pattern recognition receptors [BR:
dpub04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104298753 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
LRR_8
LRR_14
NB-ARC
nSTAND_NTPase5
NPHP3_N
RsgA_GTPase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
104298753
NCBI-ProteinID:
XP_009897150
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MELQDTKRQIMNSPSVSESGYLDLLHSDIDPLHLYTLLDPKSSGNEEGDFSADPEADACN
CDQFNNMDFLCTMENGENGDELYLCSNTVEAYARIAELAEYVLKDQQEKQVEDAFAGNLI
LDEMTAENTEKFTDIKMQKCHKRTFLASAESCSGASEPKYKKIVDIPAVSTGNGSFLAMP
LNSHAASSTSLNSQHMSFLVPATNALERSFVFPGSSAPLIPECLLVGMNQENPGFADPPQ
QILNFVLGNGISDVIIYPVLTSTETLISPGFPVSLCGLEMFKEVQVPVTSPEVPFKRPKP
VEAFSASLMDYFRDVCKSVAMEREVTLDHLFIDGTLVQSQAETKIGKNSVRAMEKEMVTC
SLQGKERAVLKRSQLFQIPGGKDLDTKVIVVLGKAGMGKSILVQKICQDWSNGEFSQFKF
VFWFDCKQISLPEKRYSLKDLLLEFFVKPQEGSKEIFVYTFSRCSASQPEEDFCSIKELL
SGLIQKKILRGCTLLLTSRPKDKVYQYVSKVDKTIEIVGFSPQQRELFITKYFQGSPYSS
NALKLIKDSEYLFSHCHCPVMCRFVCFLCETVLEMGEKSLPSTLTTIFLKFVQQKIIPRQ
TDVTAAQNQESLTALAHIAWYLGEKHQSVIKSDLPSKKVKEFALKYGFFLPFTFPKHSSS
EEEEFGSTFSDFVIQNFLVALHLMLAEDIKDRSLTKYLSFPSKKKPLNWLDLVPRFLAGL
LFLQDDPYFCSFSKNDEKHPTKKQKTLLKYIRRLQINRLCPERLLELLHCVYETQSNHLL
QRVALRIKPELSFLGVVLTPPDVHVLHSILKSSRKEFSLDLRNSSIDMQGLKDLVGLKNV
TSFRASLSDTVRLWNSLKQTKDYEMLRASTEKFVLDPFKAKTMKDISDLSELVELQETVI
NCVQDASGCSSYEIPAIKNLRKLEFALGPVCGLQGFLKLVEILAAFPSLQHLDLDALSEN
GIGDEGAKSLSEVFPTLTSLETLNLSQNKITDVGAEKLATALPSLSSLKTLSLYNNSICD
FGAENLAKVLPEMASLRVLDVQYNKITGVGAQQLTDSLRKCPHIKNLVMWNPTIPYGMLE
HLQQMDSRISV
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcaagacaccaagagacaaatcatgaattcaccatctgtgtctgaaagtggc
tatcttgatttgctgcacagtgatattgatccattgcatctgtatactctccttgatcct
aagtcatctggaaatgaagaaggtgacttctctgcagaccctgaagctgatgcctgcaac
tgcgatcagttcaataatatggatttcctgtgtacaatggaaaatggtgaaaatggggat
gaattgtatctctgttccaacactgtagaagcttatgctagaatagctgaattagcagaa
tatgtgctcaaagatcagcaggagaagcaggtggaagatgcttttgcaggaaatcttatt
ttggatgaaatgactgctgaaaacactgagaaatttactgacataaagatgcaaaaatgt
cacaaacgaaccttcttggcctctgcagagagttgctctggtgcttcagaacccaaatac
aagaaaattgtggacatccctgcagtgtctacaggaaatggcagtttcttagctatgcct
ctcaacagccatgcagctagctccacctcactgaatagccagcacatgtcctttcttgtt
cctgctaccaatgcgttggaaagaagttttgtatttcctggatcttcagcacctttgatt
ccagagtgtctacttgtcggcatgaaccaagagaatccaggctttgcagatcctcctcag
cagatactgaactttgttcttggaaatggcatatctgatgttataatatatccagtgctg
acttccacggaaacactgatatccccaggtttcccagtgagtttatgtggtttagaaatg
ttcaaagaagtccaagttcctgtaacttctcctgaagtacctttcaaaagaccaaagcca
gtggaagctttctctgcatcacttatggattacttccgagatgtgtgcaaatctgtggcc
atggagcgtgaagtaactcttgatcacctgtttattgatggaacacttgttcaaagccaa
gctgaaaccaagattgggaagaatagtgtaagagcaatggaaaaggagatggtaacttgc
agtttgcaagggaaggaaagggcagtccttaaaagaagccaactatttcaaatcccagga
ggtaaagacttagacactaaagtaattgtggtgctgggaaaagcagggatgggcaaaagc
attcttgttcagaagatctgccaggactggtccaatggagagttttctcaatttaaattt
gtgttttggtttgactgcaagcaaataagcttgcctgagaagcgatacagcctgaaggat
ctgctgcttgagttttttgtaaaacctcaagagggaagcaaagagatctttgtgtatact
ttttctcgttgctcagccagccagcctgaagaagacttctgcagtataaaggagctgctt
tcaggactcatacaaaaaaagatactccgtggttgtactttattacttacatcaagacca
aaagacaaagtgtaccagtatgtgtccaaagtggataagactattgaaattgtgggattt
tcccctcagcagagagaattgttcataaccaagtatttccaaggctcgccctacagcagt
aatgcactgaaattaatcaaagattctgagtatttgttcagtcattgtcactgtcctgtt
atgtgtagatttgtttgttttctctgtgagacagtacttgaaatgggagaaaaaagcctt
ccttcaacacttactacaatcttcctgaagtttgttcagcaaaagatcatacctaggcaa
acagatgttacagctgcacagaatcaagagagtctcactgcactagcccatatagcctgg
tacctgggagaaaagcaccaaagtgtcatcaaaagtgatcttccttctaagaaagttaaa
gagtttgctctgaaatatggatttttcctgccatttactttcccaaaacattccagtagt
gaagaagaggaatttgggagcacattctctgattttgtcattcaaaatttcttggttgcg
cttcaccttatgttagcagaagacatcaaagatagaagtctaacaaaatacctttccttt
ccatccaagaaaaaacctctaaactggttagatctagtgcctcgatttttggctgggttg
ttgttcctccaggatgacccctacttctgctccttttcaaagaatgatgaaaaacatcca
accaagaagcagaaaacactcttgaaatatattagaaggctgcagataaacaggctctgt
ccagagaggttacttgagcttttacactgtgtttatgaaacacagagcaatcatcttttg
caacgtgtggccttaaggatcaagccagagctctcttttctgggtgtagttcttacccca
cctgatgtccatgtactgcactctattttaaaaagctcaagaaaagagttttccttggat
ttgcgaaacagcagcattgacatgcaagggctaaaagacttggttggcctgaagaatgtg
acatcattcagggcctccctcagcgatacagtcaggctctggaactctttaaagcagaca
aaagactatgaaatgctgagagcatcaacagagaaatttgttcttgatcccttcaaggca
aagacaatgaaggacatcagtgacctttcagaacttgtggagctgcaggagacagtgatc
aactgtgtgcaagatgcatctggttgcagcagctatgaaattcctgctatcaaaaacctc
aggaaactagagtttgcgctgggtccagtatgtggccttcaaggattcctaaaacttgtg
gaaattcttgcagcatttccatcacttcagcatttagaccttgatgctctgagtgaaaat
ggcataggagatgagggagcaaagagtctatcagaagtctttccaaccctgacatcactg
gaaacattaaacttatcgcagaataagataacagacgtgggagcggagaaactagctaca
gctcttccttccttgtcttcattaaagacactaagcttatacaataatagcatttgtgat
tttggagcagaaaatcttgcgaaagttctccctgagatggcatctctaagagtgctagat
gttcagtataacaaaataactggtgttggagctcagcagctgactgacagcctacgaaaa
tgtccccatataaagaacttggtgatgtggaatcccaccattccctacggcatgcttgaa
caccttcagcagatggattctaggatcagtgtgtag
DBGET
integrated database retrieval system
