Dryobates pubescens (Downy woodpecker): 104299576
Help
Entry
104299576 CDS
T08526
Symbol
COL4A6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub04382
Cornified envelope formation
dpub04510
Focal adhesion
dpub04512
ECM-receptor interaction
dpub04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104299576 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104299576 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104299576 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104299576 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dpub04147
]
104299576 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
dpub00536
]
104299576 (COL4A6)
Exosome [BR:
dpub04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104299576 (COL4A6)
Glycosaminoglycan binding proteins [BR:
dpub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104299576 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104299576
NCBI-ProteinID:
XP_009898055
LinkDB
All DBs
Position
Unknown
AA seq
1656 aa
AA seq
DB search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NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttgtttaattttgtttgttttggttttgttttagggtggaaagaagtcttac
agtgggccatgtggaggccgagattgcagcgctggatgcaagtgttttccagagaagggt
gcacggggtcgaccaggaccaattgggcttcaaggaccaataggctcacctggatttact
ggcccagagggtttgccaggagcaaaaggtgagagaggtgcggtgggcccccctggacca
gctggacagaaaggtgaaaagggcccaatgggagttccaggatttcaaggcatgaatggg
atcccgggtcaccctggacagtctggacctagaggacttcctggccttgatggctgcaat
ggtaccattgggagccctggcgtttctggatcagatgggtttcctggcctacctgggctc
cctggtcgtcctggtccaaaaggcctcaaaggagaacctgtttttgctcaaggcagtctt
aaaggaatgaagggagaaaatggtcttcctggattggatgggatttctggtccaaaaggt
tttccaggtccaaaaggttctgcaggccctataggactgccaggcttgcagggtccagtg
ggtccccctggaccaccaggtccaaaaggtaacatgggattaggctttcaaggagagaaa
ggagaaaagggtgatgtagggctgcctggccctccaggtcctccaccatccactggaata
ctggaattcatggggtttcctaaaggaaagcaaggagaaaagggtgagccaggccctcaa
ggattacctggagacaaaggattgcctggcattccgggctttggaggtgttggagaaaaa
ggagaaaaaggtgttcctggtttaccaggtggcaggggtattttgggactggatgggtct
gatgggattccaggaagaaagggtcatccaggtattgcaggctatccagggctggatgga
gttgaaggcatgaagggggaatcaggtgacattggtcccccaggccctcctattgttgtt
gacagggaaggtgtagtcatttcaggtgctccaggtgaccctggaaacccaggaatacct
ggtcctccaggagatgaagggatcagtggtttaccaggccttccaggagctccaggattt
ccaggcctggagagagatggaatgggccctggagggtctccaggtattccaggtgtgaag
ggtgaagtgggagaaccaggaagagcaacgactggattaccaggcactcctggcagaggg
ggtttaccaggtctgccaggagcaccaggattgcctggtccaccacgcccatcattccgc
ccagatacaatcctggatggaaggactggggccccgggggagcctggacaaagagggctg
ccaggagttttgggtccaaaggggtacaaaggagaggcaggtgactgtgcttgtgatgga
ggagttacaagagctggtctaaaaggcatctcaggtccaccaggtccatcaggaagtccc
ggtgtgcctggcattaaaggcattggtggagacccaggcgctgtgggtgacccaggactg
cgaggccctccggcttctgctggtcagcaaggtcttccaggccttaagggagaaaaaggg
gaattgtcctatgccacaaccaaaggtgctcgtggggaccgtggtgcaacagctcccaga
ggaccttcaggcatcccaggaacccctggcagggatggacttccaggcttgccaggccca
cctggccctccaggtgatggtgggctgggtttcccaggtgaaaaaggactgccaggatta
cctggttccaagggctatcgtggagaaactggttctcctggcattggatatccaggtcct
agtggagttcgtgggccaccaggtgacccaggaattgatgggtttccaggacaagtaggt
cttccaggccctccaggtatcaccttgccttgcatagttcccggagcatatgggccccca
gggactcctggctttccaggatcaccaggtcccaaaggcagcaaaggctttcctggaatt
ccaggccaacctggattacttgggtcaaaaggccagccagggtctccaggactaataggc
ttgcaaggggaacctggcttcccaggtcctcgaggagagcaagggtcacaaggacttcca
ggactagatggaacagatggtttgcctggaaaaatgggtgcttcaggcttaggtggagca
aaaggagctcctggagatgtatttggtgctgagagtggagccctgggagagcgtggtcga
tctgggctcccaggtgataaagggcttgcaggtgatcttggatttccaggaccaaaaggg
ttagatggacgaccaggcctcctgggtgttaaaggcgaacagggtaatccaggatattcg
ggtgtccctggactgcggggacctcctggtcctggaggtcctttcggcattaagggaaaa
ccaggacccttggggtcagttggccttacaggagcaccaggctgtcaaggacttcctgga
cctaagggcttgactggggatgtaggtccacaaggccctgctggtatgaaaggcttccca
ggtcttgatggtgctccaggatctcctggggaaagaggattcttagggccacctgggcct
tttggtcaagatggacgtccaggtttctctgggccaaaaggggagaaaggatcttctggt
ctgctgggtttccctggcatgccaggcctgcctggtgtccctggggtgagtggctttaaa
ggagctcctggcacagctggagtaagtgggagccctggtgctgtgggactccaaggtcaa
aaaggtgaaagaggtgatgtaggtccacctggtcttcctgtacttgggcttccagaacag
gcattgcagttcaaaggagacaaaggagatcctggattagctggacttgcaggatttcct
ggacctagaggtgataaaggaatcccaggaagccgtggacagcctggtctccctggtcca
gttgggtcagcaagcaaagagaaaggtctttatggtgacccaggcttccctggtccacct
ggacaggttcagatggtatcacaggaatacttggattcccagggcctgctggcctccctg
gtccaaaggggcaccactggagcaaaaggagagcgaggggatccagggttcccaggagag
agaggcagagaaggactcaagggtgaaccagggtacccaggaaacactggggtgactgga
ctcaaaggcagcccaggagatcttggcccagaaggaccagcaggaatcccaggaaatgct
gggctgagaggaagccctggaccgccaggacctacagggcagccaggatctgtcggattc
cctggagctcgtggaacagcaggacctaaagggttttatggatttccaggtttaaacggt
ctgaatggcctgccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctgga
ctgcaaggccctgcaggtcttccaggtccaaagggtgaagaaggttctccaggcttgggt
agaggagctccaggattccctggaccgaaaggctcagcaggagatgtgggtccccctggt
cctgtgggactgcctggaatgccaggaacacctggagtttctcttccctctgatatacgt
ggtagacctggggatgctggccatccaggaactgatgggagttcaggtcttccaggtcct
tcaggaccacgagggccccccggcccagcttctgaccaaggtgacacaggcaatccaggt
ttccctggtgttcctggcttgcaaggcattaaaggtgacatgggacacgctggtccagtt
ggacttcctggagcatctggactcaaaggtataagaggggagcctggccttatggggatg
ccaggtaaagatgggcctccaggagatcctggttaccctgggctgaaaggtgaaatgggt
cgtcgaggtctccctggccggcagggggctccaggtataaccccacagccagaagaagtc
acagctcctgcaggcttgcctggtctgccaggaattgatggtgtccctggctttgatgga
gatcctggattgcagggcccagctggaaaaccaggcacaaaaggtctgccaggaagatct
ggtttgaaaggacgtgatggcttacctggaacacctggcacagttggggatccaggacct
ttgggtgccccgggaccacagggatttgaaggtgttgctggaaagccgggctcgctgggt
ttgccgggaatgcctgggcgcagtgtgggcgttggatacactttagtgaagcacagtcag
tcagagcagatcccaccctgtcccataggaatgaacaagctgtgggagggctacagctta
ctgtatgtggagggacaggaaaagtcacacaaccaggatctcggttttgctggctcgtgt
ttgcctcgcttcagcaccatgcctttcatttactgcaacatcaatgaggtgtgctactat
gccagccgaaatgacaagtcctactggctctccaccactgcacccatccccatgatgcca
gtggacagtgttcagatcccacagtacatcagtcgctgctccgtgtgtgaagcaccttcc
caggctgtggctgtgcacagccaggacatcaccatcccacagtgtccccttggctggcgc
agcctatggataggatactccttcctcatgcatactgcagctggtgccgaaggtggaggt
cagtcccttgtctcccctggttcctgcctggaggatttccgtgctactccattcatcgag
tgcaacggtgctcggggaacgtgccactactttgcaaacaaatacagcttctggctgacc
accgtggagcagtcacagcagtttgtcagtgctcctccctcagaaaccctgaaagcaggg
cagctccggacgagggtcagccgctgccaagtgtgcatgaagaacttgtag
DBGET
integrated database retrieval system
