Dryobates pubescens (Downy woodpecker): 104299576
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Entry
104299576 CDS
T08526
Symbol
COL4A6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub04510
Focal adhesion
dpub04512
ECM-receptor interaction
dpub04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104299576 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104299576 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104299576 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dpub04147
]
104299576 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
dpub00536
]
104299576 (COL4A6)
Exosome [BR:
dpub04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104299576 (COL4A6)
Glycosaminoglycan binding proteins [BR:
dpub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104299576 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104299576
NCBI-ProteinID:
XP_009898055
LinkDB
All DBs
Position
Unknown
AA seq
1656 aa
AA seq
DB search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NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttgtttaattttgtttgttttggttttgttttagggtggaaagaagtcttac
agtgggccatgtggaggccgagattgcagcgctggatgcaagtgttttccagagaagggt
gcacggggtcgaccaggaccaattgggcttcaaggaccaataggctcacctggatttact
ggcccagagggtttgccaggagcaaaaggtgagagaggtgcggtgggcccccctggacca
gctggacagaaaggtgaaaagggcccaatgggagttccaggatttcaaggcatgaatggg
atcccgggtcaccctggacagtctggacctagaggacttcctggccttgatggctgcaat
ggtaccattgggagccctggcgtttctggatcagatgggtttcctggcctacctgggctc
cctggtcgtcctggtccaaaaggcctcaaaggagaacctgtttttgctcaaggcagtctt
aaaggaatgaagggagaaaatggtcttcctggattggatgggatttctggtccaaaaggt
tttccaggtccaaaaggttctgcaggccctataggactgccaggcttgcagggtccagtg
ggtccccctggaccaccaggtccaaaaggtaacatgggattaggctttcaaggagagaaa
ggagaaaagggtgatgtagggctgcctggccctccaggtcctccaccatccactggaata
ctggaattcatggggtttcctaaaggaaagcaaggagaaaagggtgagccaggccctcaa
ggattacctggagacaaaggattgcctggcattccgggctttggaggtgttggagaaaaa
ggagaaaaaggtgttcctggtttaccaggtggcaggggtattttgggactggatgggtct
gatgggattccaggaagaaagggtcatccaggtattgcaggctatccagggctggatgga
gttgaaggcatgaagggggaatcaggtgacattggtcccccaggccctcctattgttgtt
gacagggaaggtgtagtcatttcaggtgctccaggtgaccctggaaacccaggaatacct
ggtcctccaggagatgaagggatcagtggtttaccaggccttccaggagctccaggattt
ccaggcctggagagagatggaatgggccctggagggtctccaggtattccaggtgtgaag
ggtgaagtgggagaaccaggaagagcaacgactggattaccaggcactcctggcagaggg
ggtttaccaggtctgccaggagcaccaggattgcctggtccaccacgcccatcattccgc
ccagatacaatcctggatggaaggactggggccccgggggagcctggacaaagagggctg
ccaggagttttgggtccaaaggggtacaaaggagaggcaggtgactgtgcttgtgatgga
ggagttacaagagctggtctaaaaggcatctcaggtccaccaggtccatcaggaagtccc
ggtgtgcctggcattaaaggcattggtggagacccaggcgctgtgggtgacccaggactg
cgaggccctccggcttctgctggtcagcaaggtcttccaggccttaagggagaaaaaggg
gaattgtcctatgccacaaccaaaggtgctcgtggggaccgtggtgcaacagctcccaga
ggaccttcaggcatcccaggaacccctggcagggatggacttccaggcttgccaggccca
cctggccctccaggtgatggtgggctgggtttcccaggtgaaaaaggactgccaggatta
cctggttccaagggctatcgtggagaaactggttctcctggcattggatatccaggtcct
agtggagttcgtgggccaccaggtgacccaggaattgatgggtttccaggacaagtaggt
cttccaggccctccaggtatcaccttgccttgcatagttcccggagcatatgggccccca
gggactcctggctttccaggatcaccaggtcccaaaggcagcaaaggctttcctggaatt
ccaggccaacctggattacttgggtcaaaaggccagccagggtctccaggactaataggc
ttgcaaggggaacctggcttcccaggtcctcgaggagagcaagggtcacaaggacttcca
ggactagatggaacagatggtttgcctggaaaaatgggtgcttcaggcttaggtggagca
aaaggagctcctggagatgtatttggtgctgagagtggagccctgggagagcgtggtcga
tctgggctcccaggtgataaagggcttgcaggtgatcttggatttccaggaccaaaaggg
ttagatggacgaccaggcctcctgggtgttaaaggcgaacagggtaatccaggatattcg
ggtgtccctggactgcggggacctcctggtcctggaggtcctttcggcattaagggaaaa
ccaggacccttggggtcagttggccttacaggagcaccaggctgtcaaggacttcctgga
cctaagggcttgactggggatgtaggtccacaaggccctgctggtatgaaaggcttccca
ggtcttgatggtgctccaggatctcctggggaaagaggattcttagggccacctgggcct
tttggtcaagatggacgtccaggtttctctgggccaaaaggggagaaaggatcttctggt
ctgctgggtttccctggcatgccaggcctgcctggtgtccctggggtgagtggctttaaa
ggagctcctggcacagctggagtaagtgggagccctggtgctgtgggactccaaggtcaa
aaaggtgaaagaggtgatgtaggtccacctggtcttcctgtacttgggcttccagaacag
gcattgcagttcaaaggagacaaaggagatcctggattagctggacttgcaggatttcct
ggacctagaggtgataaaggaatcccaggaagccgtggacagcctggtctccctggtcca
gttgggtcagcaagcaaagagaaaggtctttatggtgacccaggcttccctggtccacct
ggacaggttcagatggtatcacaggaatacttggattcccagggcctgctggcctccctg
gtccaaaggggcaccactggagcaaaaggagagcgaggggatccagggttcccaggagag
agaggcagagaaggactcaagggtgaaccagggtacccaggaaacactggggtgactgga
ctcaaaggcagcccaggagatcttggcccagaaggaccagcaggaatcccaggaaatgct
gggctgagaggaagccctggaccgccaggacctacagggcagccaggatctgtcggattc
cctggagctcgtggaacagcaggacctaaagggttttatggatttccaggtttaaacggt
ctgaatggcctgccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctgga
ctgcaaggccctgcaggtcttccaggtccaaagggtgaagaaggttctccaggcttgggt
agaggagctccaggattccctggaccgaaaggctcagcaggagatgtgggtccccctggt
cctgtgggactgcctggaatgccaggaacacctggagtttctcttccctctgatatacgt
ggtagacctggggatgctggccatccaggaactgatgggagttcaggtcttccaggtcct
tcaggaccacgagggccccccggcccagcttctgaccaaggtgacacaggcaatccaggt
ttccctggtgttcctggcttgcaaggcattaaaggtgacatgggacacgctggtccagtt
ggacttcctggagcatctggactcaaaggtataagaggggagcctggccttatggggatg
ccaggtaaagatgggcctccaggagatcctggttaccctgggctgaaaggtgaaatgggt
cgtcgaggtctccctggccggcagggggctccaggtataaccccacagccagaagaagtc
acagctcctgcaggcttgcctggtctgccaggaattgatggtgtccctggctttgatgga
gatcctggattgcagggcccagctggaaaaccaggcacaaaaggtctgccaggaagatct
ggtttgaaaggacgtgatggcttacctggaacacctggcacagttggggatccaggacct
ttgggtgccccgggaccacagggatttgaaggtgttgctggaaagccgggctcgctgggt
ttgccgggaatgcctgggcgcagtgtgggcgttggatacactttagtgaagcacagtcag
tcagagcagatcccaccctgtcccataggaatgaacaagctgtgggagggctacagctta
ctgtatgtggagggacaggaaaagtcacacaaccaggatctcggttttgctggctcgtgt
ttgcctcgcttcagcaccatgcctttcatttactgcaacatcaatgaggtgtgctactat
gccagccgaaatgacaagtcctactggctctccaccactgcacccatccccatgatgcca
gtggacagtgttcagatcccacagtacatcagtcgctgctccgtgtgtgaagcaccttcc
caggctgtggctgtgcacagccaggacatcaccatcccacagtgtccccttggctggcgc
agcctatggataggatactccttcctcatgcatactgcagctggtgccgaaggtggaggt
cagtcccttgtctcccctggttcctgcctggaggatttccgtgctactccattcatcgag
tgcaacggtgctcggggaacgtgccactactttgcaaacaaatacagcttctggctgacc
accgtggagcagtcacagcagtttgtcagtgctcctccctcagaaaccctgaaagcaggg
cagctccggacgagggtcagccgctgccaagtgtgcatgaagaacttgtag
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integrated database retrieval system
