Dryobates pubescens (Downy woodpecker): 104299684
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Entry
104299684 CDS
T08526
Symbol
USP42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
dpub01002
]
104299684 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dpub04121
]
104299684 (USP42)
Enzymes [BR:
dpub01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104299684 (USP42)
Peptidases and inhibitors [BR:
dpub01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104299684 (USP42)
Ubiquitin system [BR:
dpub04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104299684 (USP42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
104299684
NCBI-ProteinID:
XP_009898172
LinkDB
All DBs
Position
Unknown
AA seq
1327 aa
AA seq
DB search
MTIVNKPKSSNSKKSSSRRSDKSKKPRTKKMTSRTANLGRVPPAEDPNGSVDKGPAGHIY
CRSSQKSKPFAQRDLVVNDGIAPPQRILFPPEKICMDWQQTQSVGVGLQNLGNTCFLNST
LQCLTYTPPLANYMLSLEHTQSCHEEGFCMMCTMETHINQVLCCSNNAIKPTSVINGLKR
IGKHFHFGSQEDAHEFLCFTVDALQKACLNGSTKLDRSSQATTLIYQIFGGYLRSRVKCL
NCKAVSDTYEPFLDITLDIKAVTSVTRALEQFVKPEQLDGENSYKCSKCKKMVPASKRYT
IHRASNVLTISLKRFANFTGGKINKDVKYPEYLDLRAYMSQSIGEPLIYALYAVLVHSGF
NCNAGHYLCFIKAGNGLWYRMNDASVELSDIKTVLNQQAYVLFYIRRYDLTLGERAFYLP
APSYPRSFLGQRGANSKQAGFMGPRLPPHMIKNSSRLNGNGPLKEDPSTIGVTLKRPSSA
PPTACVQNWAIARPSIPDPSKPQKITISIHNKLPARQTVSQPDCPSGAAEDEDLSKPVAS
STITNSSAAESTSNASTVSVATNISKQEVPDEIFVEPAVNGNGNSKLSSDNVVPYSSESS
GKSEESKGLFKRNCNIVSSNGILIGKVVRTLQNSHSSCQNAEEERSQHELPKNDSLNGAI
SLDNESKENGLKLDDSTCQVQPVKPSEIFFSKTNGLLETMPITLSPVPQEILLESLTYSQ
LNSLSEEISVPGPQKSSENEALMETVVMEALFAYEESKKVPSNFSCEVENLFSQSDSETI
STKEVAESIKQADNVHPNINSQHKVRKKSLDNEDEFLGQCESEDGRDKDKPRRSKEPELI
SKENPLYIKGSPESEEKLGPTSSLKSDIECSSKKLASLDTADKCQDTKDISNNYVEVPPV
NDSSITKLDKVLESQFSRENEGLSNKKCEEDKHRKKYKKTLYDSKRTDKEHYRKKRESSD
TEEKEKQTRSKADDHSHRRRCSRSVETNKQNRPKQEYCSESKYRASHGDRKSPDKGKSSG
KYSRYRSRSRERTEQDRNRYYHSKGERTWSRERYYQDEPRRWDKCRYYNDYYSSYGARDG
RERKSSYCDKDFDKVSQAYNRSQKDYHCRSRWPHNTFTDGHHFSSHRANFYHCSVPQQQS
EKYPRERHAFPPLSAHSNFEDSSWENEKLRNGKRKSSPSESSGSEIERKCRKIDDQRMKK
YKKKKKKSKDKHREKDYKHYDLDDSVLRFDNDSRKHKKKKKKKKHIRKPKDFLEHLDPHF
QKKRWEREESCPPGGYFCEQYRNQGSNQPSKEGKSSAAGESKKHSFIPSNEYGKDAELTD
GSLHYSS
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttaacaagccaaaatcttcaaactctaaaaaatcatcatcgaggcggtct
gacaaatccaagaaaccccgtacgaagaaaatgacatcacgcactgcaaatctgggacgg
gtaccacctgcggaagacccaaatggctcagtggacaaaggacctgcaggtcatatttat
tgtaggtcatctcaaaaatctaagccttttgcccaaagagatctagttgtcaatgatgga
attgccccaccacaaaggattctgtttccacctgagaaaatttgtatggactggcagcaa
acacaaagtgtgggagttggactgcaaaacctgggcaacacctgcttccttaattctact
cttcagtgtttgacctatacacctccgcttgccaattacatgctttctcttgaacacacc
cagtcatgtcacgaagaaggattctgtatgatgtgcactatggaaactcacataaaccaa
gtcctgtgttgctccaataatgccatcaaacccacatctgttatcaatggccttaaaaga
ataggaaaacatttccattttggcagtcaggaagatgcccatgaattcttatgcttcacc
gtcgatgctttgcagaaagcttgcttgaatggaagcaccaaattggacagatcttcccaa
gccaccacccttatctatcaaatatttggaggctatctaagatctcgagtgaagtgctta
aactgcaaagcagtttcagatacctatgagccattcctcgatattactttggatataaag
gcagttacatctgtcaccagggctctagaacagtttgtgaaaccagaacaactggatggt
gaaaacagctacaagtgcagcaagtgtaaaaagatggttcctgcctcaaagagatacacg
atacaccgtgcttccaacgttctcacaatatcactgaagaggtttgcaaattttactggt
ggaaagatcaataaggatgtaaaataccctgaatatttggatctccgagcatatatgtcc
caatcaataggagaacctctcatctacgctttatatgcagttcttgtacatagtggtttc
aactgtaatgcaggacactatctctgcttcatcaaggctgggaatggactctggtatcga
atgaatgatgcttcagtagagctctctgatatcaagacagtgctcaaccagcaagcttat
gtgcttttctatatcaggcgctatgatttgacgctcggagaacgtgctttttacctgccg
gcaccgtcttatccccgctccttcctcggtcagcggggggctaatagtaagcaggctggc
tttatgggaccacgacttcctcctcacatgattaagaattcgagccgtttaaatggaaac
ggacccctaaaagaggatcccagtaccattggtgttaccctaaaaaggccatcttcagct
ccaccaacagcttgtgttcaaaactgggcaattgccaggccttcaattccagatccatca
aaaccccagaagatcactatcagtattcataacaaattgcctgcacgtcaaactgtgtca
caacctgactgtcctagcggtgctgcagaggatgaggacctaagcaagcctgttgcttca
tctaccattacaaattcttctgcagcagagtctacctcaaatgcatctacagtgtcagtt
gctactaacatttccaaacaggaagttcccgatgagatttttgttgagccagcagtgaat
ggaaatggaaactctaaactcagctctgataatgtagtcccttacagttcagaatcttca
ggaaaatctgaggagtccaagggcttgtttaaaaggaattgcaacatagtatcttccaat
ggaattttgattggaaaggtggtccgtaccttgcagaattcccattcttcctgtcagaac
gctgaagaggagagatcccagcacgagctgccaaaaaatgattcactaaatggtgctatt
agtttagataatgaatctaaagaaaatggactgaaacttgatgattccacttgccaagtc
caacctgttaaaccttctgagattttcttttctaaaacaaatggattgcttgaaacgatg
cctataactttgtcgccggttcctcaagaaatcctcttagagtctctcacgtacagccag
ctgaacagcttgtcagaggaaataagtgtccctggaccacagaagtcttctgagaatgaa
gctcttatggaaactgtagtgatggaagcactctttgcctatgaggaatcgaagaaggtt
ccttccaactttagctgtgaggttgagaatcttttttctcaatcagattctgaaaccatt
tctaccaaagaagtagctgaaagtataaaacaagctgataatgtacatcctaatatcaac
agtcagcacaaggttaggaaaaaatccttggataatgaagatgaattccttgggcaatgt
gagtctgaagatggcagagacaaagacaaaccaagaaggtcaaaagaacctgaactcatt
tcaaaagaaaatcctttgtacatcaaagggtctcctgagagtgaagagaaattaggacca
acttcctctttgaagtctgacattgaatgtagttctaaaaaacttgcatcgttagatact
gcagacaaatgccaggatacaaaggacatctctaataactacgtagaagtaccacctgtt
aatgactcttccattacaaagctggataaggttttggagagtcaattttctagagaaaat
gagggactgagtaataaaaaatgtgaagaggacaaacataggaaaaaatacaagaaaact
ctgtatgactccaaaagaactgacaaagagcactaccgaaagaagagagaaagctcagac
accgaagagaaggagaagcaaaccaggagcaaagcagatgaccattcccacaggaggagg
tgctctcgcagcgtggaaacaaataagcaaaatcgtcctaagcaggagtactgcagtgaa
agcaagtacagagcttcccatggtgacagaaagagcccagacaagggcaaaagctcagga
aaatattctcggtatagatcccgaagcagagaaagaacagaacaagacaggaataggtat
tatcattccaaaggggagagaacttggagcagagaaagatactatcaagatgagccacgg
agatgggataaatgcaggtactacaatgattattattcctcttatggagcaagagatggt
agagagagaaagtcttcttactgcgataaagactttgacaaagtgagtcaagcttacaac
aggtcacagaaggattatcattgcagaagcaggtggcctcacaacaccttcactgatgga
catcactttagcagccacagagcaaacttctatcattgttcggtacctcagcagcaatct
gaaaaatatcctcgtgaaaggcatgcatttccacctctgtcagctcactccaactttgag
gactcttcctgggaaaacgaaaaactaagaaatggcaaaagaaaatccagcccctcagaa
agcagcggaagcgaaatagaaaggaaatgccggaaaatagatgaccaaagaatgaaaaaa
tataagaagaagaaaaagaagtccaaagataaacatcgagagaaggattacaaacattat
gatttggatgactctgtgctccgctttgacaatgacagtcgcaaacataagaaaaagaag
aaaaagaagaaacacatcaggaaaccaaaagacttcttggaacacttagatcctcatttt
cagaagaaaaggtgggagagggaagaatcctgtcctccaggtggctatttttgtgagcaa
tacagaaaccagggcagtaaccagccctccaaggaagggaagtcttctgctgcaggtgaa
agcaagaaacacagcttcatcccatccaatgagtatggtaaagatgcagagcttactgat
ggaagccttcactactccagctaa
DBGET
integrated database retrieval system
