Dryobates pubescens (Downy woodpecker): 104299852
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Entry
104299852 CDS
T08526
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104299852 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104299852 (EDC4)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104299852 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
104299852 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
WDR55
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
104299852
NCBI-ProteinID:
XP_009898349
LinkDB
All DBs
Position
Unknown
AA seq
1394 aa
AA seq
DB search
MVLGRLRPAQGQRGPARPCLADQGAREPAGKPFLESVSSFLLKSSTEEKALGVSDSVKLP
QEPAVVADSPAGNCSVNENQRPSNSYNGDLNGLLVPDPLVAADGPSLAKPVHRSVSLAAL
QEKQVICLSGDDSSTCLVISAKDVEVVASSDSSITSKARGSNKVKIKPVARYDWEQKYYY
GNLIAVSNSFLAYAVRVPTNGLAVVRVLSVSTAERTLLKGFTGGVADLAFAHLNSNQLAC
LDEAGNLFVWRLAMDKDKIQEEILVNIKRPETTTLNPSRRIIWCPFIPDDSEESGEEGSQ
TLALLHEDRAEVWDLDILRTNNSSWPVEVPSIKEGFIVVKGHSTCLSEGALSPDGTVLAT
ASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPEVPFWRFLITGA
DQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYLILSDVQRKVLYVM
ELMQNQEEGKAYFSSISEFLLTNPVLSFGIQAVSRCRLRHTEVLPAEEENDNLGVEGAQG
AGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPALGASIPAHGSQEDFAFPDHMADLS
TEGLGSEKGSVHGSQPDLRRIAELPVLADFLSLSNDAKPKLMTPDAFMTPSASLQQLAVS
PGSSVSSLTAVTAISSTSVTDSSMPRPSEDLTVSPKMQLDTSLTLSSSSSSLQTSPRSHS
VLIPGLPDKLTPKAPVAVVQGNPSLALELQEVEPLVVPQASPTRERSPDVISSASTALSQ
DIPEIASETLQRSFAAAPPGLPPEELGPHADSMASAASALHLLSPRTRHGSEHGHHTLDV
PEVDRLSAPSLLETALTQESAAPDSMGVQPWPAAPDITRETRGSLADSPRDEVEEKHKSS
AYHRHSYQLLQHDSQDASAEQRDVNQSPRSSNNQVTPEFQEELMCILRSQQQELSELRQN
QVELLQRLTDHLDTIQSSLMGHVERVLDSQQEQEQRRLERALTEGQQRNGQLQEHLHQQL
SQSLSTALYSRLDRTIREELKKTIPQCISKSMDPVAGQLSNNMAAKLTAVEGTLKESITK
LVKSKNLTDTIVRATADTLQGPIQAAYRETFQSVVLPAFEKSCQAMFQQINDTFKQGTQE
YIQQLEAHLKNKKLREQEAREPLLGQLRQVLGSLQSSAEQLASSVAAGVQSELQHQLHVI
VGNMQETILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHLDFQSQQTH
ILQMLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLTQPVLLSLIQQLSS
DLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQVEPHNTLSKPARR
LMIMLQGLVTPGMT
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggtcctgggccggctccgtccagcccagggccagaggggtcccgctcggccctgcctc
gctgaccaaggtgcccgggagccagcggggaagccgtttctggagagtgtttcttccttc
ctgctcaagagcagtactgaggagaaggccttgggggtgtcagatagtgtcaaacttccc
caggagccagcagtggttgctgacagcccagcaggcaattgctcagtgaatgagaaccag
aggccatcaaactcctacaacggggacctgaatgggctgctggtgcctgaccccctggtg
gctgcggatggaccctccctggccaagccggtgcaccgcagcgtctccctggcagccctg
caggagaagcaggtcatctgcctctcaggtgatgacagctccacttgtttggtgatatca
gcaaaagatgtggaggttgtggccagcagtgactccagcatcaccagtaaggccagaggg
agtaacaaggtgaaaataaagcctgtggccagatatgactgggagcagaaatactactat
ggcaatctgatagctgtctccaactccttcctggcctatgctgtcagagttcccaccaat
ggcttggccgtggtgcgggtgctgagcgtcagcacggccgagcgcaccttgctgaagggc
ttcactggcggcgtggcagacctggcctttgctcacctcaactccaaccagctggcctgc
ctggatgaggctgggaacctttttgtttggcgtctggccatggataaggacaaaatccaa
gaggagatcctggtgaacatcaagcgtcctgagaccaccaccctgaacccctcccgtagg
atcatctggtgccccttcatccccgacgacagcgaggagagtggtgaggagggcagccag
acactggccctgctgcatgaggacagggcagaggtgtgggacttggacatcctccgaaca
aacaacagctcctggcctgtggaagtgcctagcatcaaagaaggcttcattgtagtgaaa
ggccacagcacgtgcctgagcgagggagctctttctccagatggaactgtgctggccaca
gcaagccatgatggctttgtcaagttctggcagatctacattgaggggcaggatgagcca
aggtgtctccatgagtggaagccccacgatggtcgccctctgtcctgcctgctcttctgt
gacaaccataaaaaacaggacccagaggttccattctggagattcctcatcacaggagca
gatcagaacagagaattgaagatgtggtgcacagtgtcttggacctgcctgcagactgtc
cgcttttctcctgacatcttcagctccatgagcattcttcccagcctgaaagtctgcctg
gatctctctgctgaatacctgatcctgagtgatgtgcagagaaaagtcttgtatgtgatg
gagctgatgcagaatcaagaagaagggaaagcttatttcagctccatctcagagttcctc
ctcaccaacccggttctaagctttggcatccaggctgtgagccgctgtcggctgaggcac
actgaagtactcccagcagaagaggaaaatgacaacttgggtgtggaaggagctcaggga
gctggggctgtcgaatcagcagcaggcgtgctgatcaagctcttctgtgtgcacaccaag
gccctgcaggatgtgcagatcagattccagcctcttcacagccctgctctgggtgcatcn
attcctgctcatggctctcaggaagactttgcctttccagaccacatggctgatctcagc
actgaagggctgggatctgagaagggatctgtgcatggctcccagccagacctgcggcga
attgcagagctgcctgtcctggcagacttcctgtccctctcaaacgacgccaaaccaaag
ctgatgactccagatgcattcatgacaccaagtgcatctcttcagcagctcgccgtgtcc
ccaggcagcagtgtcagctccctgactgcagtcacagccatcagcagcacctctgtcact
gactcctccatgcccaggccatcagaagacttgactgtgagccccaagatgcagctggac
accagcctcacactgagcagcagcagcagcagtctccagacaagtcctaggagccattct
gttctcatcccaggcctccctgacaaactaacaccaaaggcacctgttgcagttgtacaa
ggaaacccctctttggccctggagctgcaggaggtggagcccttggtggtgcctcaggct
tctcccacccgtgagcgctcgccggacgtcatctcctctgcttccacagccctgtcccag
gacatccccgagatcgcctctgagaccctgcagcgcagcttcgcggccgccccgcctggg
ctgcctcctgaggagctggggccccatgctgacagcatggcctcggccgcctccgccctg
cacctgctgtctccccgcacccggcacggctccgagcacggccaccacaccctggacgtg
cccgaggtggataggctgagcgctccctccctgctcgagactgctctgacgcaggagagc
gccgcccctgacagcatgggggtgcagccgtggccggcagccccagacatcacccgtgag
accaggggcagcctggcagacagcccaagggatgaggttgaagagaagcacaagagctct
gcctaccatcgccacagctaccagctgctgcagcatgacagccaggatgccagtgcagag
caaagggatgtgaaccagtcaccaagatcttctaacaaccaggtgacccctgagttccag
gaggagctgatgtgcatcctgaggagccagcagcaagagctctctgagctgcggcagaac
caggtggagctgctgcagagactcacagaccacctggacaccatccagagctctctcatg
ggccacgtggagagggtgctggactcccagcaagagcaggagcagaggaggctggagcgg
gcgctgacggagggtcagcagcgcaacgggcagctgcaggagcacctgcaccagcagctc
tcccagtccctctccaccgcgctctacagccgcctggacaggaccatccgcgaggagctg
aagaagaccatcccccagtgcatttcaaagagcatggaccctgttgctgggcagctgagt
aacaacatggctgccaagctcactgctgtggaggggaccctgaaggagagcatcactaag
cttgtgaagtcgaagaaccttaccgacaccatcgtgagggcaacagctgacaccctgcag
ggccccatccaggcagcctacagagaaaccttccagagtgtggtcctgccggcctttgag
aagagctgccaggccatgttccagcagatcaatgacaccttcaagcagggcacacaggag
tatatccagcagctggaggctcacctgaagaacaagaagctgcgggagcaggaggcccgg
gagccgctgctggggcagctgcggcaggtcctgggcagcttgcagagcagcgcggagcag
ctggcatccagtgtggctgccggtgtccagagcgagctgcagcaccagctgcacgtcatc
gtgggcaacatgcaggagaccatcttggcccaggtgcagagagtcatcaaaggagaggtg
agcctggcaatgaaggagcagcaggcagcggtcacctccagcatcgtgcaggccatgcgc
tctgcggccggcactcccatcccctccacacacctggacttccagtctcagcaaacccac
atcctgcagatgctgcagcagggacacctcaaccaggctttccagcaggctctgacagca
gctgatctcaacctggtgctgtacgtctgtgaaactgtggacactcagcaggtgtttggg
cagcacccctgccccctgacccagcctgtgctgctctccctcatccagcagctctcctct
gacctgggtacccgtacagagctgaaactgaattacttggaggaagcggtgatgcacctg
gaccacagtgaccccatcacccgagaccacatggggtctgtcatgaaccaggtgcggcag
aagctgttccagttcctgcaggtggagccccacaacacgctgagcaagcctgcacggcgc
ctcatgatcatgctgcagggcctggtcacccctggcatgacctag
DBGET
integrated database retrieval system
