Dryobates pubescens (Downy woodpecker): 104300150
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Entry
104300150 CDS
T08526
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104300150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104300150
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104300150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
104300150
NCBI-ProteinID:
XP_009898702
LinkDB
All DBs
Position
Unknown
AA seq
591 aa
AA seq
DB search
MAAALHNRSWQIGDVKMKVICVLLKPSAVKLMLGSLDDTTGKQEDGPISGHTESSHALQD
APQENRPVSTEDREMSQHALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNL
NLKTGRGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNY
GFNEETWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDF
LALVGGRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGNKP
QPPQQPQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLP
PPGPIPGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTP
WVTTVDKGTSSSSSSHWEYSGSRRERERERERERERERDRDRTPTTSEYNNDDERYRYYS
RERSYDFERDYRRSRDRSREREDRHRERRHRDKEESSKHKSSRRKQHESEEGESHRRHKH
KKNKRSKEEKEASEDGAQEGEEQDAKEQPSPAALSRSSLRWNQRGSGDGLV
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagccctccacaacagatcttggcagattggtgacgtaaaaatgaaagtaatt
tgtgtgttactgaaacccagtgcggttaaactgatgttgggctctttggatgacaccacc
ggtaagcaagaagatggaccaatttctggacacacagaatcctctcatgctctgcaagat
gctcctcaggagaaccggcctgtcagcactgaagaccgagagatgtcacaacatgccctt
cccagtggtgaagatgatgaagacgacagtgatagcgacagcgatgacgatgacgtcaaa
gttacaattggcaacattaaaacgggagcaccatcgtacatgggaactcctatgaatctg
aacttaaaaacgggtagaggctatggagcatctgcttcagccaagttgcagcccaaaggt
attgacttagatgctgcagggaatataaatggattgcctgttatcgaagtggatttagat
tcatttgaagacaaaccatggaggaaaccaggtgctgatctttctgattactttaattat
ggattcaatgaagaaacatggaaagcttactgtgaaaagcagcgacggcttcagctggga
ctggatcctgctcctcccatcagcacggagaataagatcacggttcagcaaggaagaaca
ggaaatgctgagaaagaggtggaaaacaacatcatcaaaacagaattcaaaacagacttc
ttggctctagtgggaggacgcatgaaggctgggcctcctcccaataggaagctgggtggg
accatcgacgtgatcggtgggcaggcaggcaccatcaggagagtagaaggaagacgtcgt
gataagcatgcctctgaggagaacccaattcaggtccttggagaccatggaaacaagccc
caacctccccagcagccccagcagccatcacagccccagcagccacctcagcaacagcca
tttgcaccaccagcaggcccaccgcctcccccgctggctgggccacctccaccacacttc
ctccatcctcctccaccagttacttctgttccacctcccctgcatcctccaggtctgcca
ccacccggtcctattccagggttgttcccgcctcctctggcaccaccaccagctctcctc
attccaaccttggatggccaaccagccagctacaacaacaggcagcctccaccatttggc
tacaactctgcagattcaggtttcatcagctacccgcccatctccacgtcccacacgccc
tgggtgacgacggtggacaaaggcacgagcagctccagcagcagccattgggagtactcg
ggctccaggcgcgagcgggagcgggaacgcgagcgggagcgggaacgcgagcgagaccgg
gaccgcacccccaccaccagcgagtacaacaatgacgacgagcggtaccgctactacagc
cgcgagcgcagctacgacttcgagcgcgactaccgccgcagccgggaccgcagccgcgag
cgcgaggaccggcaccgggagcgccggcaccgggacaaggaggagagcagcaagcataag
tcctcccgacgcaagcagcacgagagcgaggagggggagagtcaccggcgccacaagcac
aaaaagaacaagcgcagcaaggaggagaaggaggccagcgaggacggtgcccaggaagga
gaggagcaggatgccaaggagcagccatcacctgcagccctcagcaggagctcgctccgt
tggaaccagcgtggcagtggtgatggtttggtttga
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