Dryobates pubescens (Downy woodpecker): 104300198 Help Entry 104300198         CDS       T08526                                  Symbol COL6A1 Name (RefSeq) collagen alpha-1(VI) chain   KO K06238   collagen type VI alpha Organism dpub  Dryobates pubescens (Downy woodpecker) Pathway dpub04510   Focal adhesion dpub04512   ECM-receptor interaction dpub04518   Integrin signaling dpub04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:dpub00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104300198 (COL6A1)    04518 Integrin signaling     104300198 (COL6A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     104300198 (COL6A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     104300198 (COL6A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:dpub04147]     104300198 (COL6A1)    00536 Glycosaminoglycan binding proteins [BR:dpub00536]     104300198 (COL6A1) Exosome [BR:dpub04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    104300198 (COL6A1) Glycosaminoglycan binding proteins [BR:dpub00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104300198 (COL6A1)  Hyaluronan   Extracellular matrix or blood plasma proteins    104300198 (COL6A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  VWA Collagen VWA_2 DUF1194 vWA-TerF-like DUF5507 Motif Other DBs NCBI-GeneID:  104300198 NCBI-ProteinID:  XP_009898751 LinkDB All DBs Position Unknown AA seq 1023 aa AA seqDB search MRPRHFLFTSLILAAFLAGGSWAQRPEITTRVANAEDCPVDLFFVLDTSESVALRVKPFG DLVAQVKDFTNRFIDKLTNRYYRCDRNLVWNAGALHYSDEVVLIKSLTAMPRGRDELKNR VSAVNYIGKGTYTDCAIKRGIEELLISGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA NEAKHLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTRELDVEETINTIIDM IKLNTEQSCCSFECQPPRGLPGPPGDPGNEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ GMKGDKGSRGDKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPP GPKGDPGAYGPKGGKGEPGDDGKPGRQGIPGSPGEKGMPGNRGEPGPAGETGDEGAPGAD GPPGERGSNGERGPPGSPGDRGPRGEPGEPGPPGDQGREGPLGPPGDPGEVGPPGPKGYR GDDGPRGNEGPKGLPGAPGLPGDPGLRGERGEDGPPGNGTIGFTGAPGQPGDRGDPGING TKGYVGPKGDEGEAGDPGNDNPVPGPRGIKGAKGHRGPEGRPGPPGPVGPPGPDECEILD IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGES RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLKWIAGGTFTGEALQFTKENLLQRF TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFEGLADITLLVDSSTSVG SKNFETTKKFVKRLAERFLEAGKPADDSVRISVVQYSGRNQQKVEAQFQHNYTIVAKAID NMEYINDATDVNAALRYVTGLYQRSSRAAAKKRVLVFSDGNSQGITPRAIERAVQEAQQA GIEIYVLAVGNRANEPNIRVLVTGKSADYDVVYGERHLFRVPDYTSLLRGVFYQTVSRKI AVD NT seq 3072 nt NT seq  +upstreamnt  +downstreamnt atgaggccgcgacactttctattcacttcgctgatcctggctgccttcctggcggggggc tcttgggctcagcgcccagaaatcaccactcgggtcgcaaacgcagaagactgccctgtg gacctgttctttgtcctggacacctcagagagtgttgccctgagggtgaagccctttggt gacctggttgctcaggtgaaagatttcaccaaccggttcattgacaagctgacaaacagg tactaccgctgtgaccgcaacctggtgtggaatgctggggcactgcactatagtgacgag gttgtgctcatcaagagcctcactgccatgccccgaggccgggacgagctgaagaaccgt gtctcagctgtgaactacattgggaagggcacctacactgactgtgccataaagagaggc attgaagagctgctcatcagtggctcccatcacaaggagaataaatacctgattgtggtg actgatggacaccccttggaaggttataaggagccctgtggagggctggatgatgccgcc aatgaagccaaacacctggggatcaaagtgttctctgttgccatctcccctaaccacctg gaccagcggctcaacatcatcgccacagaccatgcctaccgccgcaacttcactgccacc agcctgaagccaacccgggagcttgacgtggaggaaaccatcaacaccatcattgacatg attaaacttaacacagagcaatcgtgctgctcttttgagtgccagcctccccgagggctg cctggacctcctggtgacccaggcaatgagggagaaagaggcaagccaggtcttcctggc cagaagggagaagctggagacccaggcaggccaggggacatgggacctgttggctaccaa ggaatgaagggtgacaaaggaagtcggggagataagggctcgagaggagccaaaggagcc aagggtgagaaaggcaggcgtggaattgacggcattgatggcatgaagggtgaagctgga tacccagggttacctggctgcaaaggctcacctggatttgacggagctcaaggcccacct ggaccaaagggagatcctggtgcttatggacccaagggaggaaagggggagcctggggat gacggaaaacctggccgacaagggatccctggcagccctggagagaagggcatgcctgga aaccggggcgagcctggaccagcaggagagacgggcgatgagggtgctccaggtgcggat ggtcctcctggagaacggggcagcaatggagaaagaggtcccccaggctcgccaggtgac cgtgggccaagaggagagccgggagagcctggaccacctggtgaccaagggcgtgaagga cccctcggacctcctggtgacccgggtgaggttggacccccaggacccaagggctacaga ggagatgatggcccccgtggcaacgagggcccaaagggattgcctggagcacctgggctg cctggagaccctggcctgagaggagaaagaggggaagatggccctcctgggaatggcaca atcggattcacaggtgccccggggcagccaggagacagaggtgaccctggcattaatgga acaaaaggctatgttggtcctaaaggtgatgaaggagaagctggagaccctggcaatgac aacccagtccctggccccagggggataaaaggagcaaagggccacagaggacctgaaggc cgcccgggaccgccaggacctgtggggcctccaggaccagatgaatgtgaaatcttggac atcatcatgaagatgtgctcttgctgtgagtgcacctgtggtcctgtcgacctcctcttc gtgttggacagctcagagagcattggcctgcagaacttccagattgccaaggacttcatc atcaaagtcattgaccgcctgagcaaggatgagcgtgtgaagtttgaagctggagagtcc cgtgtgggtgttgtgcagtacagtcatgacaacacacaggagctggtggccatgggcgat gccaacatagacaacatcggggcactcaaacaggcagtcaagaacctgaaatggatagct ggggggaccttcactggagaagccctgcagttcaccaaggagaacctgctgcagcgattc acctctgacaagcgtgtggccatcgtcatcacagacggacgttctgacacactgagggat cctaccccgctcaactcgctgtgtgatgtcaccccggtggtttcccttggaataggagac attttccggaaccctccaaatccagatcacctgaatgacattgcttgtttaagcagaccg accagaccaggactgtccattcaaagggataactatgctgagctcctggatgacactttc ttgcagaacatcacctcgtatgtctgccaagagaagaaatgtccagattatacctgtcca atcaccttcgaggggctggcagatatcacactgctggtggacagctccaccagcgtgggg agcaagaactttgagaccaccaagaagttcgtgaagcggttggcagagcggtttctggag gccggcaagcctgctgatgactccgtgcgcatctcagtggtccagtacagcggcaggaac cagcagaaagtggaggctcagttccagcacaactacaccatcgtcgccaaagcgattgac aacatggagtacatcaacgacgccacggacgtcaacgccgccctgcggtacgtcacaggc ctgtaccagcggtcctcccgtgctgctgcaaagaagagggtgctggtgttttctgatggc aactcccaagggatcactccaagagccattgagagggccgtgcaagaagctcagcaggct ggcatcgagatctatgtgctggcagtgggcaaccgagccaatgagcccaacatccgtgtc ctggtcacagggaagagtgcagattacgatgtggtctatggggagcgccacctcttccgt gtgccggactacacttctctgctgcgtggcgtcttctaccaaactgtctccaggaagata gctgttgactga

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