Dryobates pubescens (Downy woodpecker): 104300272
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Entry
104300272 CDS
T08526
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
104300272 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dpub04121
]
104300272 (SLX4)
03400 DNA repair and recombination proteins [BR:
dpub03400
]
104300272 (SLX4)
Ubiquitin system [BR:
dpub04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
104300272 (SLX4)
DNA repair and recombination proteins [BR:
dpub03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104300272 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
Zn-C2H2_12
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
104300272
NCBI-ProteinID:
XP_009898828
LinkDB
All DBs
Position
Unknown
AA seq
1745 aa
AA seq
DB search
MDDQDNDFKELWANILGRAKKKAGGAEASKKAQNRSRSTSAGSKSKRGKAAAKRQNHPHL
PAVKETKFPRDLSPKEQTSVHREGGDAVAHSSGEAAQGDGRRSPFPASQLSSGASECSQR
TLTVNALSGSSQATLSFQPATQPGTCSSPTSKIPPLAGSKLRVAELVVERMQQFKRVAPE
QLKHSTEESLAKPAASRDFPDESQEQNAAERDIHCLLSVEHDSALALALEQQTKEEALAS
LEDEGLFFCQICQKDLSAMNTTRREQHVNRCLDQMEEAQMSSSSKPVVPECPICGKQFQT
PQSRVSHLKRCAVEMEVPPKLLLQAVQLQVSTLGDAPPQCPSNQPSRPKRKASSKEDSKT
TQKRPKMETKDEDLLVAMAMSRSLAEQEKQEQAKAVTNVKPAAAFPIKWKPGSEKKRRRR
GPAAPPPLLLQDPEKVHKRIQERVAMLLAEEGEFPPTPQLPTSRILENESGKATWLLPLS
KPKECFLWNISALTGPHSPESFYTAALTPPIVPWKPVQSPLKLLAEEFGAMVNNPHLSDV
QFQVDSGEVLYAHMFVLYARCPQAVQVVHSEGFLVEEDGNAQTRRVLLSDVTAGAVSAFL
HYLYAADTAIPAGLLPQVGALAARFNVRELMAKCENNAGESQMSSELDSEDDLISVRDDN
DCEDRAENFQDLLKSMWVGECEDEAAMLSPECQREDDNGVGEQELEEIYEFAATQRKMAQ
GETKVSKGTDCSICGDSETAQGTDQQTKRSESASASNSSKAASDVERSPCDLSPQGKKMQ
TMSRCSSMSDPQSTFVPPHSEPGKWDRACHGAVANEGEPARTCEDVKDSKSSQVSHDEAD
HCEKEFPGFHGDAMRNGSYEPVFSVTQIDYCEPSPVKEVVKGSGKAPSENHVFGVNDSLL
YSKSQKDFSPCRNEFYGSPPPKLSVPIFPAVGSSPATPASERTFARALVSTPEQSKVEIP
VPPDEVHLQKANHLDTASGKENPVSPAELPHIDLNKHTDAPVLSSPVSRAQGAAAQGSKE
GDVIVLSSDDEMELEQDKRSPESGSALKNTEVPGQLKCASTEQGPEITEPEHNSSVTETD
QRSTQVSCGITATVQISNCVKMSTEFSLSRQRDACMESKQSPNLSPEEKLDHEMSSGTDS
SWLVPDTPALSKNRSFSTQTEVSSIHSVKGPGSKLSTKDLAAGSSNHKMAGDLIKVGETT
LSDKQPVDNLVSEQSLPSSPAAGSAPQYSPAVSPVNPVLLSPGHTNTQSKCAEAKVSFLS
QSVPPCCEQSLEDKTNVSVVVVEDSEKEVSLPSVSSSVLLCEEPPLPTDDCWHVEDLSPV
RGSSLEPNQGSHAKASTASSPRPGSWHDHWESPGHVQEVKGSTPLRGSPAGRTALLSPGK
SPIEGCSSVGGRPSYLNSKIWDDWNGEEEDNFPEVLPLSQRLTAAAGACQTDPVKSPEPS
CQESEKTPSTPMTPMPAYSIMETPQLKKELSRFGVRALPKRQMVLKLKEIFQYTHQDVDS
DFEGGVPLSQPPPKKSPAKRCRQPKAGRAAGGTRAGASRAVGKRKKVATASSEVPVGMAG
DDHVGSSETDCAAPKEGSKMPHHPEGAEEQKRLSVSPERWSPEDDGEEAMPSSQQSTASS
LSGSDISFGSQSSWMNGFEACAFASEEEEEEEEFSASQAAVREEEKLEAVRCYIRSNTAL
YHKVLFYEPIELAELHAELKHNGIKISRAKLLDFLDAQCITFTTAKARKEKEEKRKGKKK
QRRRY
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atggatgaccaggacaatgatttcaaagagttgtgggcaaatattttgggtagagcaaag
aaaaaagctgggggtgctgaggcatcaaagaaggctcagaacaggtcaagaagcacttca
gcaggaagcaaatcaaaaagaggcaaagctgctgccaaaagacaaaaccatcctcactta
ccagcagtaaaggaaacaaagtttcctcgagatttgagtccaaaggagcagacatcggtg
cacagagaaggtggtgatgctgtggcccacagtagtggtgaggctgcacaaggggatgga
aggagaagccctttccctgccagccagctgagttcaggggctagtgaatgcagccagagg
actctgacagtaaatgctttgagtggctcttcccaagctaccttgtccttccagcctgcc
acacagccagggacctgctcttcccccacctcaaagataccgccgctggctgggtcgaaa
ctgcgggtggcagagctggtggtggagagaatgcagcagttcaagagagtggcacctgag
cagctaaaacacagcacagaggagagtttggcaaagcctgcagccagcagggatttccct
gatgaaagccaggagcagaacgcagcagagagggatatccactgccttctgtccgtggag
catgacagtgccctggctttggctcttgagcagcaaaccaaagaggaagccctggcaagc
ctggaggatgaaggcttgtttttctgtcagatttgccagaaggatctctcagccatgaac
acaacccgacgagagcagcatgttaacaggtgtctggaccagatggaagaagcacagatg
tcatcctccagcaaaccagtggtccctgaatgtcccatctgtggcaagcagttccaaacc
ccccagagcagagtcagtcacttgaaacgctgtgctgtggagatggaggttcctcctaag
ctgctgctgcaggcagtgcagttgcaggtgtccacacttggtgatgcacctcctcagtgc
cccagcaaccagccgagcaggccaaagcgaaaggcttcctccaaagaggactcaaagaca
acgcagaagaggcccaaaatggagactaaagatgaagatttgctggttgctatggcaatg
tcacgctctctggcagagcaagagaagcaggaacaagcaaaagcagttacaaatgtgaaa
ccagcggctgctttcccaatcaaatggaagccaggatcagagaagaagcgacgcagaaga
ggcccagcagcccctcctcccttgctgctccaggaccccgagaaggttcacaagaggatc
caagagcgtgtagctatgctgcttgcagaggagggggaattccctcccactcctcaactt
cccactagtaggattttggagaatgaatctgggaaagcaacctggctcctgccattgtcc
aaacccaaggaatgctttttatggaatatcagtgctctgacaggacctcacagccctgag
tcattctacactgctgcattaacccctccaattgtgccttggaagcctgtgcagtcccct
ctgaagctgctggctgaagagtttggtgcaatggtcaacaacccccacttaagtgatgtc
cagtttcaggtggactctggggaagtcctttatgcccacatgtttgtgttgtatgcacgg
tgtccacaggctgttcaggtggttcacagtgaggggttcttggtggaggaggatgggaac
gcgcagacacgcagggtgctgctgagcgacgtgacggcaggggcagtgtctgccttcctc
cactacctctatgctgctgacactgccatccctgctgggctgctgccccaggtcggggct
ctggctgccaggttcaatgtgagggaactgatggcaaagtgtgaaaacaatgctggagag
agtcagatgtcttctgagctggattcagaagatgatcttatctctgtgagggatgacaat
gattgtgaggacagagctgagaatttccaagacctcttgaagtcaatgtgggtgggtgaa
tgtgaggatgaagcagcaatgctgagccctgaatgccagagggaagatgacaatggggta
ggtgaacaggagctggaagaaatctatgagtttgctgcaactcagagaaagatggctcaa
ggtgaaacaaaagtgagcaaagggacagactgcagcatctgcggcgatagtgagacagcc
caaggtacagaccagcaaactaagagatctgaatctgcttcggcaagcaacagctccaaa
gctgccagtgatgtggaaagatctccatgtgacttgtctccacaaggaaagaaaatgcag
accatgagtaggtgcagtagcatgagtgatccacagagcacttttgtgcctccccacagt
gaacctgggaaatgggacagagcatgccatggtgcagttgctaatgaaggagagcctgct
aggacatgtgaagatgtgaaggattccaagtcatctcaggtctcacatgatgaggcagat
cactgtgaaaaagagtttcctggcttccatggtgatgctatgagaaatggaagttatgaa
cctgtgttttctgtaactcagattgattactgtgagccttccccagtgaaagaagttgtc
aaaggatcagggaaggctcctagtgaaaaccatgtgtttggtgttaatgattcacttctc
tacagcaagtcacaaaaagacttctctccctgtaggaatgagttttatgggagtcctcct
cccaagctttctgtgcccatttttcctgcagttggttcctcacctgccactccagcatcg
gagagaacgtttgccagagcgctggtgtcgacaccagagcaaagcaaagtggaaatacca
gtcccacctgatgaagtgcacttgcagaaagccaaccacctggatactgcatcaggaaag
gagaacccagtttctccagcagagcttccccacattgatttaaacaagcatacagatgcc
ccagtgttgtcatcaccagtcagcagagctcagggtgctgcagctcaggggagcaaggag
ggtgatgttattgttttatcttctgatgatgaaatggagttagaacaagacaagagatca
ccagagtcaggctctgctctgaaaaatacagaagtccctgggcagctcaaatgtgcaagc
acagaacaaggtcctgagataacagaacctgaacataactcatcagtcactgaaacagac
cagagatcaacccaggtctcatgtggcattacagctacagtgcagataagtaattgtgta
aagatgtccactgaattctctctcagcagacaaagagatgcttgcatggagagcaagcag
agtccaaacctgagccctgaagaaaagcttgatcatgaaatgtcttcaggcactgacagc
tcctggctggtgccagacacaccagctctgagcaaaaacagaagtttctcaacacagact
gaggtctcaagtattcattctgtaaagggtccaggatctaaactcagcaccaaggacttg
gcagcaggtagcagtaaccacaaaatggctggggatttaataaaggttggagaaacaaca
ctgtcagacaaacagcctgtggacaacttggtcagtgaacagagcctgcccagcagccca
gcagcaggatcagctccccagtactccccagcagtttctccagtgaacccagttctcctc
tcccctggccacaccaacacacaaagcaaatgtgcagaagcaaaggtgtcatttttatcc
caatctgtgcctccatgctgtgagcagtccctggaggataaaacaaatgtcagtgtggtt
gtggtagaggacagtgaaaaggaagtgagtttgccttctgtgagcagcagcgtcctgctt
tgcgaagagcccccgctccccacggatgactgctggcatgttgaggatctgtcaccagtc
agaggcagcagcctggagcccaaccagggcagccatgcaaaggccagtactgccagcagc
cccaggcctggctcttggcatgaccactgggagagcccaggccacgtgcaggaggtgaag
ggcagcacccctcttcgaggaagtcctgctggcagaactgctttgctctctcctggaaaa
agtcctatcgagggatgctcatcagtgggtggtagaccaagttacctgaactccaaaatc
tgggatgactggaatggggaagaggaagataactttccagaggtccttcctctgtctcag
aggctgacagctgcagcaggtgcctgtcagacagaccctgtgaagtctcctgaaccttcc
tgtcaggagagtgagaagactcccagcactccaatgacaccaatgccagcttactccatc
atggagaccccacagctgaagaaggagttgagcagatttggagtccgtgctctccccaaa
cgccagatggtgttgaagctgaaggagatattccagtatactcaccaggatgtggactct
gactttgagggtggagtccccttgtcccagcctcccccaaagaagtccccagccaagcgc
tgtcggcagcccaaggcggggcgggcggcaggtggaacgcgtgctggtgcctccagggct
gtgggcaaaaggaagaaggttgctacagcatcctcagaggtccctgtagggatggctggt
gatgatcatgttggatccagtgaaacagactgtgcagcacccaaggagggaagtaaaatg
ccacatcacccagaaggagctgaagagcagaaaaggttgtctgtatctccagagagatgg
tctccggaagatgatggtgaggaagcaatgccttcatctcagcagtccacagcctcttca
ctgagtggaagtgacatctcttttggttcacagagttcttggatgaatggattcgaagcc
tgtgcttttgcatcagaggaggaggaggaggaagaggagttctcagcctctcaggcagct
gttcgggaagaggaaaagctggaggcagtgaggtgctacatccgttcaaacacagccctg
taccacaaggttctcttctatgagccgatcgagctggctgagctgcacgcagagctgaaa
cacaacggcattaaaatctccagggcgaagctgctggatttcttggatgctcagtgcatc
acctttactacagccaaagctcggaaagagaaggaagagaaaagaaaggggaaaaaaaaa
cagaggagacgatactga
DBGET
integrated database retrieval system
