KEGG   Dryobates pubescens (Downy woodpecker): 104300400
Entry
104300400         CDS       T08526                                 
Symbol
KDM4B
Name
(RefSeq) lysine-specific demethylase 4B
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
dpub  Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:dpub00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dpub03036]
    104300400 (KDM4B)
Enzymes [BR:dpub01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     104300400 (KDM4B)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     104300400 (KDM4B)
Chromosome and associated proteins [BR:dpub03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    104300400 (KDM4B)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD SLX1_C DUF7141 DUF4537 53-BP1_Tudor SLX9
Other DBs
NCBI-GeneID: 104300400
NCBI-ProteinID: XP_009898991
LinkDB
Position
Unknown
AA seq 1111 aa
MGSEAPSPQNPGCKIMTFRPSLEEFRDFGKYIAYMESQGAHRAGLAKVIPPKEWKPRKTY
DDIDDMVIPAPIQQVVTGQSGLFTQYNIQKKPMTVGEYRRLANSEKYCTPRHQDFEDLER
KYWKNLTFVSPIYGADISGSLYDADVEEWNIGNLNTLLDMVEHECGIIIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAKGFFPGSSQGCDAFLR
HKMTLISPSILKKYGIPFDRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKMATQCTCRKDMVKISMDVFVRVLQPERYDLWKQGKDIAVLDHMKPTALTSPELDAWNE
TKADLKAKLLRRIGDEEEDKQHRSHRKRSQPRRHKTEDQKSLGDVMAMETALEDVKVKEE
LKRGPDIEEEERSKVMEGEGDCKVKARPPKVKGERKKKHLFHQHHLQAPQPPLQPQQPPL
PAPQQQLAEEEAPAARPPVPSAVPTSSCADKGLVPAPLNVVQPSEAAAEEDDFKPRPIIP
MLYVVPRSKKVVFDKEHMSCQQAFEQFATKKGPAWRQPALPVDIPLKEEENGEAENPQVA
AEVSGLQTASAFSKLKMEIKKSRRHPLGKPPTRSPLSVVKQETSSDEETFPFSGEEDMSD
PEALKSLLSLQWKNKAPNFPAERKFNAAAALSEPYCAVCTLFYPYNQSLQPEKEAVPVSA
GETTSFVHLSKCGQKTKPLIPEMCFTSSGENTEPLPSNSYIGEDGTSPLISCAKCCLQVH
ASCYGIHPDLVNESWSCSRCSANAWAAECCLCNLRGGALQMTTDGRWVHVICAIAVPEAR
FVSIIERHPVDISAIPEQRWKLKCVYCRKRMKKVSGACIQCSYEHCSTSFHVSCAHAAGV
PLEPDDWPYVVSITCFKHKAANQSIPFRREVALGQTVITKNRNGLYYRCKVIGTTTQTFY
EVNFDDGSYSDNVYPESIISRDCIQLGPPSEGEMVQLQWTDGIVYKAKFIAAQISQIYQV
EFEDGSQLMVKRGDIYTLEEELPKRVKSRLSLSTGAPQEEVFSGDEVRAAKRPRLGNSRN
PEEYGQTPDYLAFMESLLQTQYQPGSQSNMF
NT seq 3336 nt   +upstreamnt  +downstreamnt
atggggtcggaagcgccgagcccgcagaaccctggctgcaagatcatgaccttccgcccc
agcctggaggagttccgggacttcgggaagtacattgcttacatggagtcccagggagcc
caccgagcggggctggccaaggtgattcctcctaaagaatggaagcctcggaagacctac
gacgacatcgatgacatggtgatcccagcccccattcagcaggtggtgactgggcagtca
gggctcttcacccagtacaacatccagaagaagcccatgactgtgggagagtaccggcgg
ctggccaacagcgagaagtattgtactccacgccatcaagattttgaggacttggagcgc
aagtactggaagaacctcacatttgtctctccaatttatggggctgatatcagtggctca
ctgtatgatgcagatgtggaagaatggaatattggcaacctgaacaccctcttggacatg
gtggaacacgagtgtggcattatcatagaaggtgtgaacactccctacctctactttggg
atgtggaagaccacatttgcttggcatacagaggacatggatctctacagcatcaactac
ttgcattttggggagccaaaatcctggtatgccatacctccagagcacggcaagaggctg
gaacgcctggcaaaaggcttttttccaggcagctctcagggatgtgacgctttcctccgt
cacaagatgaccctcatttccccttccatcctgaagaaatacggcatccccttcgacagg
atcacccaggaagctggagagtttatgattacatttccctatggttaccatgctggcttc
aatcatggcttcaactgtgctgagtccaccaactttgccactctgagatggattgactat
gggaaaatggcaacccagtgcacttgccgcaaggacatggtgaagatctccatggatgtc
ttcgtcagggtcctgcagccggagcgctacgacctgtggaagcagggcaaagacattgct
gtcctggaccacatgaaacccacagctctcaccagccctgagctggatgcctggaatgag
acaaaggcagacctgaaggctaaattgcttcgcaggataggagatgaggaagaggacaag
cagcaccggtctcacagaaagagaagtcaacccagaagacacaagacagaggatcagaag
tctcttggggatgtcatggctatggagactgccttggaagatgtgaaagtaaaagaggag
ctgaagagagggcctgatatagaggaagaggagagaagcaaagtgatggagggagaaggt
gactgcaaggtgaaggctcgtcctccgaaggtaaaaggtgagaggaagaagaagcacctt
ttccaccagcaccacctgcaagcacctcagccccctctgcagccccagcagcctccactc
cctgccccccagcagcagctggcagaggaggaggcgccagcagcacggccgccggtcccc
agcgcggtccccacctcctcctgcgcggacaagggcctggtcccagcgcccctgaacgtc
gtccagccctcggaggcagccgccgaggaggacgacttcaagcctcggcccatcatcccc
atgctctacgtggtgccacgcagcaagaaggtggtgtttgacaaggagcacatgtcctgc
cagcaggccttcgagcagtttgccaccaagaagggccctgcctggcggcagccagccctc
cccgtggacatccccctgaaggaggaggagaacggagaggcggaaaacccccaagtggct
gcagaggtcagtggtctgcagactgcttctgccttctccaaactgaagatggagatcaag
aagagtcgccggcacccgctgggcaagcccccgacccgctccccgctctcggtggtcaaa
caggagacctccagcgatgaggaaacatttccattttctggagaggaagatatgagtgac
ccagaggctttgaagtctttactttccctccagtggaagaacaaagcaccaaatttccca
gcagagcgaaaattcaacgcagctgctgccctgagtgagccatactgtgctgtctgcacc
ctcttctacccctacaaccagtccttacagccagagaaagaagctgtcccagtctctgca
ggggagaccacctcttttgtccacctctccaagtgtggacaaaagaccaagcctctgatc
ccagagatgtgctttacctcaagtggagaaaacacagagccccttccttcaaattcctat
attggagaggatggaaccagtcccttgatatcctgtgccaaatgctgcctgcaggttcat
gctagctgttatggaatacatccagacttggtgaacgaaagttggtcttgctcgcggtgc
tcagccaatgcctgggcagcagaatgctgcctgtgtaatctcaggggaggagctcttcag
atgaccacagatgggaggtgggtccatgtaatctgtgctattgctgtccccgaggctcgt
tttgtcagcatcatagagcgtcatcctgtggacatcagtgctattccagagcagagatgg
aaactgaaatgtgtctactgtcggaagaggatgaagaaggtgtctggggcctgcatccag
tgctcctacgagcactgctccacctccttccacgtcagctgcgcgcacgcggccggcgtg
cccctggagccggacgactggccctacgtggtgtccatcacttgcttcaaacacaaagca
gctaaccagagtatccccttccggcgggaggtggcccttgggcagactgtgatcaccaag
aaccgcaatgggctctactacaggtgtaaggtgattggcaccaccacacagaccttctat
gaagtcaactttgatgatgggtcatacagtgacaacgtttacccagaaagcatcattagc
agagactgcatccagctgggacctccttcagaaggtgagatggttcagctgcagtggaca
gatggaatcgtctataaggccaagtttattgcagcccagatcagtcagatctaccaggtg
gagtttgaggatggttctcagttaatggtgaaacgtggagacatctacaccctggaggag
gagctgcccaagagggtgaagtcacgcctgtccctcagcactggggcccctcaggaagag
gttttttcgggagatgaagtgagagcagccaagcgtccccggctggggaattccaggaac
ccggaagagtatggacagaccccggattacttggcctttatggagagcctgctgcagaca
cagtaccagcctggatctcagagcaacatgttttaa

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