Dryobates pubescens (Downy woodpecker): 104300594
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Entry
104300594 CDS
T08526
Symbol
PRPF38B
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104300594 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpub03041
]
104300594 (PRPF38B)
Spliceosome [BR:
dpub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104300594 (PRPF38B)
Complex C
U4/U6.U5 tri-SnRNP related factors
104300594 (PRPF38B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
104300594
NCBI-ProteinID:
XP_009899199
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MANNSPAVGAGNCQGQQAAQHQPGAVPPTQQQLQSGPPKPAASGKQGNVLPLWGNEKTMN
LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR
GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW
FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKTIDQQIKSRP
RKIKKDGKEGMEEIDRHAERRRSRSPRRSISPRRSPRRSRSRSHHREGHGSSSFDRELER
ERERQRLEREAKEREKERRRSRSADRALERRRSRSRDRYRSRSRSRDRKGDRRDRDRERE
KENERSRRKERDYDKERGSEREKDRSRDRDRSRERSKERKSKGDLEERRHKDDKDDKKHR
DDRRDSKKERKHSRSRSRERRHRSRSRSKNTGKRSRSRSKEKSSKHKTESKERSNKRSRS
RSRGRTDSVEKSRKRDQSPSKEKARKRSRSKERSHKHDHSDSKDHADKHDRRRSQSTERE
SQEKQQKNKDETV
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacagccccgctgtcggcgccgggaactgccaggggcaacaggcggctcag
caccagcctggcgccgtcccgccgacccagcagcagcttcagagcggaccccccaagccg
gcggcctcagggaaacagggcaacgtgctgccgctgtggggaaatgagaagaccatgaac
ttaaaccccatgatcctcactaacatcctctcgtcgccctatttcaaggtgcagctctac
gagctcaagacttaccatgaagtagtggacgagatctacttcaaggtcacacatgttgaa
ccatgggaaaaagggagcaggaaaacagcaggccagacagggatgtgtggcggggtacgt
ggtgttggaactggaggaattgtgtctactgccttttgtctgctctacaaattatttaca
ctgaaactaactcgtaagcaagtcatgggccttataactcacacagactctccatatatt
agggctcttggatttatgtatattaggtatacacaaccacctactgatctatgggactgg
tttgaatcctttcttgatgatgaagaggatctggatgtgaaggcaggtgggggttgcgtt
atgaccatcggggagatgcttcgttccttccttactaagcttgaatggttttccacgttg
tttccaagaattcctgtgccagtccagaaaaccattgaccagcaaattaaaagcagacct
agaaaaatcaagaaagatggcaaggagggaatggaagaaatagaccggcacgcagaacgt
agacgttcaaggtctccaagacgatccatcagtccaaggaggtcaccgagaagatccaga
agtagaagtcatcatcgagaagggcatggatcatctagttttgatagagagctagaaaga
gaaagagaacggcagagattagaacgcgaagctaaggagagagaaaaagaaaggcggaga
tctcgaagtgctgatcgtgcactagaacggaggcgaagcagaagcagggacagatacagg
agccggagccgaagtcgtgacagaaaaggagacagaagagacagggatagggagcgagag
aaagaaaatgaacggagccggagaaaagagagagattatgataaggaaagaggtagtgag
agagagaaagatagatctagagatagagatagatctagagaaagatcaaaagaaaggaaa
agtaagggtgatctagaagagagaaggcacaaggatgacaaggatgacaagaaacacagg
gatgacaggagggattccaaaaaagagagaaagcatagtagaagtcgaagccgggaaaga
aggcataggagtaggagccgaagtaagaacacaggtaagcgcagcagaagtaggagcaaa
gaaaaatcaagtaaacataaaactgaaagtaaggagagatcaaataaaagaagtagaagt
agaagcagaggaaggacagatagtgttgagaagtccagaaaacgagaccagagtcccagc
aaagaaaaagctagaaagcgtagcagaagcaaagaacgttcccacaaacacgatcacagt
gacagcaaggaccatgcggacaaacacgatcgtcgcaggagccaaagcacggaacgagag
agccaagaaaagcaacagaaaaacaaagatgagactgtgtga
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