Dryobates pubescens (Downy woodpecker): 104300661
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Entry
104300661 CDS
T08526
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub04136
Autophagy - other
dpub04140
Autophagy - animal
dpub04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104300661 (ATG16L1)
04136 Autophagy - other
104300661 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
104300661 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dpub04131
]
104300661 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
dpub03029
]
104300661 (ATG16L1)
Membrane trafficking [BR:
dpub04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
104300661 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
104300661 (ATG16L1)
Mitochondrial biogenesis [BR:
dpub03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
104300661 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
ATG16
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_DCAF4
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_NWD2_C
eIF2A
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_DCAF12
Ge1_WD40
Beta-prop_WDR19_1st
CCDC93_CC
Beta-prop_Vps41
PUMA_CC
INO80F
WD40_like
Fez1
ZapB
Lipoprotein_6
HTH_6
FUSC
HEF_HK
AP5B1_middle
V_ATPase_I
WH_CYT4
DUF6550
Motif
Other DBs
NCBI-GeneID:
104300661
NCBI-ProteinID:
XP_009899280
LinkDB
All DBs
Position
Unknown
AA seq
545 aa
AA seq
DB search
MQSRHEMSPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQKDR
EMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKLRK
TTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPDDDIEV
LADETSDTAEETSPVRTKNQTSSKRLSQPAGGLLDSITNIFGRRSLSLFPAPQDNVEPHA
GASKEVRVPTTAIRVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVLGDRCEPKGSL
SGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTLTGHSGKVLSAKFLLDNAR
IVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRTESIV
KELELLGRITALDLNSERTELLTCSRDDLLKIIDLRVSAVKQTFSAQGFKCGSDWTRVVF
SPDGNYVAAGSADGALYVWNVLTGKLERTLAKHHSSPINAVAWSPAGAYVVSVDKGNKVV
LWSDF
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagcagacatgagatgagtccaggacatgatggaacatggaatgatgctcagttg
caggagctggcacaattgaagataaagcatcaagaggagctaacagagctgcataagaaa
cgtggcgagctggcccagtctgtaattgatctgaataaccaaatgcagcagaaggacaga
gagatgcagatgaatgaagcaaagattgcagagtatttgcaaaagatctctgaactggaa
acagagtgccaggaattgcgtagcaagctgcaagatcttgagcgagctaatcagacattg
aaagatgaatatgatgctctccagattaccttcaatgccttggaggagaaacttaggaaa
actactgaagacaaccaagagctggtctcgcgttggatggcagagaaagcacaagaagcc
aatcgtctgaatgcagaaaatgaaaaggattcaaggagacgacaagccaggcttcagaag
gagctagcagaagctgccaaagagcccctgccagttgaaccggatgatgatattgaagtg
cttgcagatgaaacctctgacacagctgaggagacatctccagtgcgaactaagaaccaa
acatccagtaagcgactctcccagccagctggaggccttctggactctatcactaatatc
tttgggaggcgttctctgtccttgttccctgctccccaggataacgtagagccacatgct
ggtgccagtaaggaagtgagagtgcccactactgccatacgtgtcttcgatgcacacgat
ggggaggtgaatgctgtgcagttcagccctggctctcggttactagcaacaggaggcatg
gaccggagggttaagctttgggaagtcttgggagataggtgtgagcccaaaggttccctc
tctggtagtaatgctgggattacaagcatagaatttgatagtgctggttcttacctctta
gcagcgtcaaatgactttgccagcagaatctggacggtcgatgacaatcggttacggcac
accctgacaggtcacagtggcaaagttctatcggccaagttcctcctggacaatgcgcgc
attgtttcgggaagccacgaccggaccctcaagctctgggacctacgcagcaaagtctgt
ataaaaacagtgtttgcaggatctagctgcaatgacatcgtatgtaccgagcaatgtgta
atgagtggacattttgataagaaaattcgtttctgggacatcaggactgaaagcatagta
aaagaactagaactgcttggaagaatcacagctttggacctgaactcggagcgaacagaa
cttttgacctgttcccgtgatgatctactgaagatcattgatctgcgggttagtgctgtc
aagcagacattcagtgcccagggattcaaatgtggctctgactggacaagagttgtgttc
agccctgatggtaattatgtggctgctggttcagctgatggggccctctatgtttggaat
gtgctcactgggaaattggagaggacacttgctaaacatcacagttctcctatcaatgca
gtcgcatggtcaccagcaggtgcctatgttgtcagcgtggacaaaggaaacaaagttgtc
ctgtggtctgatttttga
DBGET
integrated database retrieval system
