Dryobates pubescens (Downy woodpecker): 104300776
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Entry
104300776 CDS
T08526
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03013
Nucleocytoplasmic transport
dpub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104300776 (UPF1)
03015 mRNA surveillance pathway
104300776 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104300776 (UPF1)
Enzymes [BR:
dpub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104300776 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104300776 (UPF1)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104300776 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104300776 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_11
AAA_12
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104300776
NCBI-ProteinID:
XP_009899396
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MQQVNGPDGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPAC
VVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFL
LGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLR
ARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLE
ADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPL
WKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVD
ETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGP
PGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAID
SPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVI
CCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCK
KAAKAGLSQSLFERPSTLGALLGVAASEAALTGTGSHPAADRVKKGFDFQWPQPDKPMFF
YVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQ
FSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARY
GVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGAR
FMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLV
MPPMPPPGYFGQANGPAAGRGAPKGKAGRGGRQKNRFGLPGASQANLPNSQASQDVVSQP
FSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQ
HGGVTGLSQY
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaggtcaatggccctgatggcatcctgcagaatggagctgtggatgacagtgtg
gctaaaaccagccagctcctggctgagctcaactttgaggaggatgaggaggacacctat
tacacaaaggatcttcctgtgcatgcttgcagctactgtggcatccatgaccctgcctgt
gtggtgtactgcaacaccagcaagaagtggttctgcaacgggcgtgggaacacctctggc
agccacattgtgaatcatctggtgagagcaaagtgcaaggaagtgaccctgcacaaggat
ggacctctgggagagactgtcctggagtgctacaactgtggctgtcgtaatgtcttcctc
cttggcttcattccagccaaggcagactctgtggtggttttgctctgcaggcagccctgt
gccagtcagagcagtctgaaggacattaactgggacagctcacagtggcagcctctgatc
caggaccgctgcttcctctcctggctggtgaagatcccctctgagcaggagcagctgagg
gcaaggcagatcacagctcagcagatcaacaagctggaggagctgtggaaggaaaatcca
tctgcaaccctggaggacttggaaaagcctggagtggatgaggagcctcagcatgtcctg
ctgagatatgaagatgcttaccagtaccaaaatatctttggcccccttgtcaagctggag
gcagactatgacaagaagctgaaggagtctcagacccaggacaacatcacagtcagatgg
gacctgggcttgaacaagaagaggattgcttacttcactctgccaaagaccgactcagac
atgagactcatgcaaggagatgagatctgcctgaggtacaaaggggacctggctcctctc
tggaaaggcattggccacgtcatcaaggttcctgataattatggtgatgagatagccata
gagctgaggagcagcgtgggagcccctgtggaggtcacccacaacttccaagtggacttt
gtgtggaagtctacttcctttgacaggatgcagagtgctttaaaaacctttgctgtggat
gagacctctgtctctggctacatctaccacaagctgctggggcacgaggtggaagatgtc
atcatcaaatgccagctgccaaagcgctttacagcacaaggacttcctgatctcaaccac
tctcaggtttatgctgtgaagactgtcctgcagcgtcccctgagccttatccagggtccc
cctggcactgggaagacagtgacatcagccaccattgtctatcacctggccagacagggc
aatgggcctgtcctggtctgcgctccaagcaacatcgctgtggatcagctgacggagaag
atccaccagaccggcctgaaggtggttcggctgtgtgccaagagcagggaggcaatcgac
tctcctgtgtccttcctggcactgcacaaccagatcaggaacatggacagcatgccagag
ctccagaagctgcagcagctgaaggatgagactggagagctgtcctctgccgatgagaaa
cgttaccgtgccctgaagcgaacggccgagcgagagctgctcatgaatgcagatgtgatc
tgctgcacgtgtgtgggcgccggggaccccaggctggccaagatgcagttccgctccatc
ctgatcgacgaaagcacccaggccaccgagcccgagtgcatggtgccagtggtgctggga
gccaagcagctgatcctggtgggtgaccactgccagctgggccccgtggtgatgtgcaag
aaggctgccaaggcagggctgtcgcagtcgctgttcgagcgcccctccaccctgggggct
ctgctgggtgttgctgccagtgaggcagctctgactgggactggttctcaccctgcagca
gaccgtgtgaagaagggctttgacttccagtggccccagccagacaagccaatgttcttc
tacgtcacccaggggcaggaggagattgccagctcgggcacctcctacctgaacaggacg
gaagctgccaacgtggagaagatcaccaccaagctgctgaaggctggtgccaagccagac
cagattggcatcatcaccccctacgagggccagcgctcctacctggtgcagtacatgcag
ttcagtggctccctgcacaccaagctctaccaggaagtggaaattgcgagcgtggatgcc
ttccagggccgggagaaggacttcatcatcctgtcctgtgtgagggccaacgagcaccaa
ggcattggcttcctcaacgaccccaggaggctcaacgtggccctgaccagggcaaggtat
ggagtcatcattgttgggaaccccaaggctctgtccaagcagcccctctggaaccacctc
ctgaactactacaaggagcagaaggtgctggtggagggacccctcaacaacctgcgggag
agcctcatgcagttcagcaagccccgcaagctggtcaacaccatcaaccctggcgctcgc
ttcatgaccactgccatgtacgacgcgcgcgaggccatcatccccggctccgtctacgac
cgcagcagccaaggccgtccctccaatatgtacttccaaacgcacgaccagatcgggatg
atcagcgccgggcccagccacgtcactgccatgaacattcccatccccttcaacctggtg
atgccgcccatgcctccccctggctacttcggccaggccaacgggccagctgcaggccgt
ggggcacccaaaggcaaggctgggcgtggggggcgccagaagaatcgctttgggctacct
ggagccagccaagcaaaccttcccaacagccaagccagccaagatgtggtgtcccaacct
ttctcccaggggccactgactcagggctatatctccatgagtcaaccatcacagatgagt
cagcctgggctctcccaaccagaattatcccaggacagttaccttggtgatgagtttaag
tcccagatcgatgtggcactgtcacaggactctacttaccagggtgaacgtgcatatcaa
catggtggcgtgacagggctgtcacagtactag
DBGET
integrated database retrieval system
