Dryobates pubescens (Downy woodpecker): 104300850
Help
Entry
104300850 CDS
T08526
Symbol
PKD1L2
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dpub04040
]
104300850 (PKD1L2)
Ion channels [BR:
dpub04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
104300850 (PKD1L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Gal_Lectin
REJ
Lectin_C
Ion_trans
GPS
PKD
Abhydrolase_9_N
Motif
Other DBs
NCBI-GeneID:
104300850
NCBI-ProteinID:
XP_009899472
LinkDB
All DBs
Position
Unknown
AA seq
2462 aa
AA seq
DB search
MWLGITVLTSLAACLVVEEATIDEGIPCSKYQLAFNLSCYEFVRLQHTFTSAQSWCERGG
GHLVFIENEETQEFLQKHIAEDQEWWIGLISNSLLNETTEGSMIWLDTSNISYSNWYKDQ
PSPVSSTCGYILKNAKYQWGVTENCSQEFDFICEFESGQSIACDNSNATVQCGSGEVIQI
EESFYGRKTPHYCVSEPSLQHDTDGDCSWISVKDEVAGQCHGLQACQVTADGTFFGDPCP
ASGSYLSIQYQCKEGLQLAVPDESFVFENITVSLSWLLSPYSGNLSCIISTGDGHTIDPY
YPLTLVSNITHRYSSPGEFTVFVECTSSEWHVMAQKRVSVHPKMDQLSITGCYSQHQSGN
SSLCRTLYGELLWIQVELNGGNGVTYILLADNMTLTESSEKEGIVPHNLTLDSTAQELLG
PGVHQLEIRASSNTSASRISGSIAVHLIEPVSGLQATLPSHTLQLRENLEINVSVSHGAP
DKLKFEVIGSNETHSHEEDCPHGEPQMYIIPVPSEGTFLVRVVAMNALSNTSLDLGFITV
LANSSQIEDSAKEESSAKTNAQKTNDHKRKYKIYIKPRRHVDPFTTVTLGWPGNNNSSSF
LWSCGACWPEWSKCVQQQIILTNQTEVQIPPACLPPPKSAVTVRVTVRNHGNEERQDEQC
LYVTAKKELQLEIRCEANCKPVNASEEVVLSVSGQEDSQALYYNWYLDKTFQTKSTVLPL
ACGLTGFQQNSLHLLQSNTSVLKMNSSFLQTQGEAFQIKVTGVTQRGYGEQTYLVSTVPP
PEVPSCAVSPKQGSVLTMFRVSCSTPCLAHPCQSSHNRLTYCLYLKSNSLLHCGPDPEFF
PVYLPLGEEENNFILHMTITVSNSFGDTIQTNASVKVGHTDMRDSNTTLQAIVSEKANTI
LKEANNSMSLFQLYKSVTSVLNQETQEESFNISLQTNTRKELRGMMLTTLSAVNVTSMQT
ALKMSEVLKEITYRSEELSVSAQVGASNTLKDVSASLLTVSMENSRGDQKLKDAVNYLFH
AVSNVLKASVEIRGVNTSVPEAEQSSVSHQLLNTVENLQSALLFGKEPNDEPTVLTTPSA
TMYIHRLQTENMDGTSINISSSGSASFTLPSTSSLSVSGFDETVDIRMVSFAMNPFFSSN
TSFDISGTVGGLSLTGLDGLIIPVSNLKENIEITLPRLSATQEDKILLNLGNFSTFQVNV
TSENTSVVIHLESERDIPLILYLGYGYHPNETNYDMKNHLFCKKTSAGETNTWILSPEEL
IFGEGTYYFMVLQDMGMDSTVYERLTVAVTCFASLCVFWDESQGNWNSYGCHVGPKTTPR
STQCLCNHLTFFGSSFFVIPNAIDVSKTAQLFGTFVDNPVVVTTVGCLFLIYVLVIVWAR
RKDIQDNAKVKITVLEDNDPFAQYRYLVTVFTGHRRGAATTSKVTLTLYGLEGESEPHHL
TDPDTPVFERGGVDVFLLCTFFPLGELQSIRLWHDNSGDNPSWYVNRVLVHDLAWDQKWY
FLCNSWLAIDIGECVLDKVFPVATEQDMKQFSNLFFMKTSKGFQDGHIWYSVFSRSPRSS
FTRAQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMDLGKIEFTWQEVMIGFESSLLMFP
INLLIVQIFRNIRARPATQGREKKPGKNGRVSPSLPPTPQVTQAVSLTPEAVTKDIRRIA
NSLSKALRAPSLTSASDLGKSTNINTLLALVEDIISHQNRAGQEFYEGSKKKDDPIIVTL
GAMDIQEKRRSPAPERGMCERLKYGDYDRCLYMQLQQVEMELELLGPQKFQMPQSHTQAV
HQVQHMKNLLGLSRWSLTPSFSGDGKKSSSPKGLPWWFVFIAWFLVAATSGVSGFFTMLY
GLHYGKEDSIKWLISMVISFLESLFITQPLKVLGFAAFFALVLKKEDEDEENTAIDGPFA
APGDSNPLFGARRDSRSNIYRPPPTADVEKMKISCMKEQKAFALIREILAYLGFLWMLLL
VAYGQRDPNSYYLNKHIENSFTDGFHSIYSYQDFFTWANTTLVKNLYGSYKGFITDGNSK
LVGSARIRQVRVQGDTCPIXXXXXXXXXXXSLQSEDMSDYGEHWNTSVFNNSSDMSSAWQ
YQSQSRLRGQPSWGKLATYRGGGYVIHLGSDPKNASRILQYLFNNVWLDTFTRAVFVEFT
VYNANVNLFCIVSLMFETNALGAFFTSSELQSVRLYPYTSSLHIFVVAAEVIYFLFIVYY
MAVQGKLMKALRWRYFQSKWNLLEMAIIVISWSALSVFVKRTILGTRDISYYQEHKEDSV
SFKETARADAVLGYLIAFLVLLSTVKLWHLLRLNPKLNMITSTLRRAWGDISGFITVIII
MFLAYSIATNLIFGWKLYSYKTLFDSAETMVSLQLGIFNYEEVLDYNPILGSFLIGSCII
FMTFVVLNLFISVILVAFSEEQKHYQASEEEEIVDLMLMKLFSFFGIKCKKEEKPVTNDQ
LE
NT seq
7389 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttgggatcacagttctaacttctcttgctgcatgtttggttgtagaggaagca
accattgatgaaggaatcccttgctcaaagtaccagttagctttcaacctctcatgctat
gagtttgttagactccagcataccttcacaagtgcccagagctggtgtgagagaggagga
gggcaccttgtctttattgaaaatgaggaaactcaagagttcttgcaaaaacatattgct
gaggatcaagaatggtggataggattgatctcaaactccttgctgaatgaaacaactgaa
gggtcaatgatttggctggacacctcgaatataagctacagtaactggtacaaggatcag
ccatctcctgtctcatccacatgtgggtacatcctgaagaatgccaagtatcagtggggt
gtgactgagaactgcagccaggaatttgacttcatttgcgagtttgaatctggtcagagc
attgcctgtgataattccaatgccactgtacagtgtgggtcaggagaagttattcaaata
gaagagagcttctatgggcggaagactcctcactactgtgtgtcagagccttctctccag
catgacacagatggagactgcagctggatcagtgtcaaagatgaagtagcaggccagtgt
catggtcttcaggcctgccaggtgacagcagatggcactttctttggagatccttgtcca
gcttctggaagctatttgtctattcaataccagtgcaaggaaggtctgcagctggctgta
ccagatgagtcctttgtctttgaaaacatcacggtcagcttgagctggctgctctctcca
tactctggcaacctttcctgcatcattagcaccggggatggccacactatcgatccttac
taccctctaacactggtcagcaacatcacacacagatattcatctcctggagagttcaca
gtctttgtggaatgcaccagcagtgagtggcatgtgatggcacagaagagggtcagcgtt
caccctaagatggatcagctaagcattactgggtgctacagccagcatcaatctggcaac
agctctctctgccgtacactgtatggggagctgttgtggattcaagttgaacttaatgga
ggcaacggagtgacctacattctattagcagataacatgacactcactgaatccagtgaa
aaggaaggaattgtgcctcacaatctgacacttgacagcactgctcaggagctgctaggc
ccaggggtacatcagctggaaatccgagcatccagcaacacaagcgcatcgaggatctct
gggagcattgctgttcacttaatcgagccagtgtctggtcttcaggctacattaccttct
cacactctgcagctgagggagaatttggagattaatgtctctgtgtctcatggtgcccca
gataagctgaagtttgaggtgattggatctaatgaaactcactctcacgaagaagattgc
cctcatggggagcctcaaatgtacatcattcctgtgccctctgaaggtactttcctagtg
agagtggtggccatgaatgccttgtcaaatacgagtctggatcttgggttcatcactgtg
ttggcaaacagttctcagatagaagattccgccaaggaagaaagcagcgccaaaacaaat
gcccaaaagacaaatgatcacaaaagaaaatacaaaatctatattaaaccgcgtcgccat
gtggatcctttcacaaccgttactcttggctggccaggcaacaacaatagttccagtttt
ctctggtcctgtggagcttgctggcctgagtggagcaaatgtgtgcagcaacagataatc
ctcaccaaccaaacggaggtgcaaatcccacctgcctgccttcctcctccaaagtcagca
gtgactgtcagggttacggtccgaaaccatggcaatgaagagaggcaggatgaacagtgt
ctctatgtgactgcaaaaaaagaactgcagctggaaatcaggtgtgaggcaaactgcaag
ccagtgaacgctagtgaagaagttgttctgagtgtgtctggacaggaggactcccaggcc
ctgtattataactggtatttagataagacattccaaaccaagtctacagtcctccctcta
gcctgtggcctgactggtttccagcagaactctttgcatttgcttcaaagcaacacatct
gtgttgaaaatgaacagctccttcttgcagacacagggagaagcttttcagattaaagta
acaggtgtgactcagcgtggctacggggagcaaacttaccttgtcagcaccgtgcctcca
cccgaggtccccagctgtgccgtgtctcccaagcagggatcagtgctcaccatgttcaga
gtctcctgcagcactccttgcttggcacatccatgccaatccagtcacaacaggctcaca
tactgcctctatctgaaatcaaattctctcctgcactgtggcccagatcctgaattcttc
ccagtttatcttccacttggagaagaggaaaataatttcattttacatatgacaattact
gtcagcaacagcttcggtgatacaattcaaactaatgcttcagtgaaggttgggcataca
gacatgagagacagtaacacgacccttcaggccattgtatctgagaaggcaaacaccatc
ctaaaagaggcaaacaacagcatgagtcttttccagctgtacaagtcagtgacatctgtc
cttaatcaggagacccaagaggaaagcttcaacatatctttacagacaaacacacgaaag
gagctccgagggatgatgctgacaactctctctgctgttaacgtaacatcaatgcagact
gctcttaagatgtcagaagtattgaaagaaatcacttacaggagtgaggagctgtctgtc
tcagcacaggtgggagcaagcaacactctaaaagatgtcagtgcttccttgctcactgta
agcatggagaacagcagaggtgatcagaagctaaaggatgcagtcaactatttatttcat
gcagtgagcaatgttcttaaagcttctgtagaaatcagaggtgtgaacacttcagtgcca
gaggcagaacagagttcagtgtcacatcagctcctgaatacagttgaaaatctacagagt
gcccttctctttgggaaagaacccaatgatgagccaacagtccttaccactccttctgcc
accatgtacatacacagattacaaacagaaaacatggatggcacatccattaacatctcc
agctccggctctgccagctttactctcccatctacttcttctctcagtgtttcaggattt
gatgaaacagtggatataaggatggtgagttttgccatgaatccctttttctccagtaac
accagttttgacatcagtggaacagtgggaggtctaagtcttactggtctggatggcttg
attataccagtcagcaatctcaaagagaacattgagataacgttaccaaggctttcagca
actcaggaagataagattctgttgaacctgggcaattttagcaccttccaagtcaatgtg
acttcagaaaacacatctgtagtgatccatctggaatctgaacgtgacattccactaata
ctctacttagggtacggttatcacccaaatgaaaccaactatgacatgaaaaatcacctg
ttctgtaagaaaaccagtgcaggtgagacaaacacttggattcttagcccagaagaactc
atttttggagaaggaacctattatttcatggttttacaagacatgggaatggattccaca
gtttatgagaggctaactgtagctgttacttgttttgcatccctctgtgtgttttgggat
gagagccaggggaattggaacagctatggatgtcatgtaggaccaaaaacaacccccaga
agcacacagtgtctctgcaaccacctgactttttttgggagctccttcttcgtcataccc
aatgccatagatgttagcaaaactgcacagctatttggtacatttgtggacaatcctgtg
gtggtgacaaccgtaggatgcctctttctgatatatgtgcttgtaattgtttgggctcga
aggaaagacatccaggataatgccaaagtgaaaatcacagtactggaagacaatgacccc
tttgctcagtatcgctaccttgtgacagttttcacaggacaccgccgtggggcagccaca
acctccaaggtgactctcaccctctatggactggaaggagagagtgagccacaccatcta
actgatcctgatacaccagtctttgaacgtggaggagtggatgtgttcctgctctgtacc
ttcttccctcttggggaactgcagagtattagactatggcatgataattcaggggacaat
ccatcctggtatgtgaatcgagtactggtccatgatctggcatgggatcagaaatggtac
ttcctctgtaactcttggctagccattgatattggagaatgtgtcctagataaagtgttc
ccagtagctacagagcaggacatgaagcagttcagtaacctgtttttcatgaagacctcc
aagggtttccaggacgggcatatctggtactcggttttcagccgctccccacggagctcc
ttcacacgagcccagcgtgtttcgtgctgcttctcactgcttctctgcaccatgctgacc
agcatcatgttctggggagtgccaaaggacccagctgagcagaaaatggatttgggtaag
atcgagttcacatggcaggaagtgatgattggctttgagagctccctcctcatgttcccc
atcaacctgctcattgtgcagatcttcaggaacatacgagcccgaccagccacccagggg
agagagaagaagccaggaaagaatggtcgggtgtccccaagcctacctcccaccccacag
gtcacccaggctgtctcactcactccagaggctgtgacaaaggacataagaagaattgcc
aactcactttctaaagccctgagggctccatctctaacttcagcatcagatcttggaaaa
tcaactaacatcaacacacttttggcattggtcgaggacatcatcagccatcagaacaga
gccgggcaagagttttatgagggaagcaagaagaaggatgaccccataattgtcacatta
ggtgctatggatatacaagagaaaagaagaagcccagctccagagaggggaatgtgtgag
cgactgaagtacggtgattacgatcgctgcttgtacatgcaactccagcaggtggagatg
gagctggagttactggggccccagaaatttcagatgcctcagagtcacacacaagctgtt
catcaggttcagcacatgaagaacctcctgggactctcaaggtggtccctgactccaagc
ttctctggtgatggcaagaaaagttcctctcccaaagggctgccctggtggtttgtgttc
attgcttggttccttgttgcagccaccagtggtgtatcaggcttctttaccatgctctat
gggctgcattatggcaaggaggactccatcaagtggctgatctccatggtcatctctttc
ttggaaagccttttcatcacacagcccttaaaggtgctgggatttgctgctttttttgct
ctggttctgaagaaggaggatgaggatgaagaaaacacagctattgatgggccttttgct
gcaccaggtgattcaaatcccctctttggagcccggcgggacagtagaagcaacatttac
cggccacctcctacggctgatgtggagaaaatgaaaattagctgcatgaaagagcagaaa
gcatttgccctcatcagagaaatcctggcctatctggggtttttatggatgctgttgctt
gttgcctatgggcagagagatcccaattcctactacttaaacaagcacattgagaacagc
tttacagatggattccacagtatctacagttaccaggactttttcacatgggccaacact
accttagtcaaaaatctgtatggatcatataaaggattcattacagatggcaattccaag
ctggtgggtagtgctcggattcgccaagtaagagtgcaaggagacacctgccctattntn
nnnnnnnnnnnnnnnnnnnnnnnnnnnncttccctgcaatcagaagacatgtcagattat
ggggaacactggaatacctcagtcttcaataactcctcagacatgagctcagcatggcag
tatcagagccagtccagactgagggggcagcccagctggggcaaacttgccacctacagg
ggagggggatacgtgattcacctgggaagtgatcctaagaacgcctccagaattctccag
taccttttcaacaatgtctggttggacaccttcacgagagcagtgtttgttgaatttaca
gtctacaatgccaatgtgaacctgttctgcatcgtaagcctgatgtttgaaaccaatgct
ttaggggccttcttcacaagctcagagctgcaaagtgtccggctttacccatacaccagc
agcctccacatctttgttgtggcagcagaggtcatttatttcctctttattgtgtactac
atggcagtacagggaaaactgatgaaggctctgagatggagatacttccagagcaagtgg
aatctcctggaaatggccatcatagtgattagctggagtgccttgtcagtgtttgtgaag
cggacaatccttgggacccgagatatcagctactaccaggaacacaaagaggactctgta
agctttaaggaaacagcaagagctgatgcagttcttggctacctgattgcattcctagtg
cttctctccacagtgaagctgtggcatctcctgaggctcaaccctaaactcaacatgatc
acttcaactctgagaagggcatggggtgatatctctggtttcatcactgttatcatcatc
atgttcctcgcctactccattgctacaaacttgatatttggctggaagctctactcctac
aaaactctctttgactcagcagagaccatggtcagtcttcagctgggaatcttcaactat
gaggaggtcttggactacaatccgattttaggctccttcttaattgggtcctgcataatt
ttcatgacatttgtggtgctgaatctgttcatttcggtgattctggttgcttttagtgag
gagcagaagcactaccaggcttcagaagaagaggagattgttgatctaatgctaatgaaa
cttttcagtttcttcgggattaaatgcaagaaggaagagaagccagtgacgaatgatcag
ctggaataa
DBGET
integrated database retrieval system
