Dryobates pubescens (Downy woodpecker): 104301260
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Entry
104301260 CDS
T08526
Symbol
POLB
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104301260 (POLB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpub03400
]
104301260 (POLB)
Enzymes [BR:
dpub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104301260 (POLB)
DNA repair and recombination proteins [BR:
dpub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104301260 (POLB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
104301260 (POLB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
HHH_5
HHH_3
NTP_transf_2
HHH_2
IMS_HHH_1
Cdd1
DUF6932
Motif
Other DBs
NCBI-GeneID:
104301260
NCBI-ProteinID:
XP_009899930
LinkDB
All DBs
Position
Unknown
AA seq
322 aa
AA seq
DB search
GITDFLAELANYERNVNRAVHKYNAYRQATSGISRYPSKIQSGAEAKKLDGVGAKIAEKI
DEFLSTGKLRKLEKIRQDDTSASINLLTRVTGIGPAAARKFVEEGIKTLEDLRKIEHKLT
HHQQIGLKYFEDFEKRIPREEMLQMQEIVLEEVKKLDPSYIATVCGSFRRGAESSGDMDV
LLTHPSFTSESSKQPKLLRQVVEQLEKVHFVTDVLSKGETKFMGVCQLPTKEDGTAFPHR
RIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEMGFTINEYTIRALGVTGVAGEPLPV
ECEKDIFDYIQWQYREPKDRSE
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
ggcatcaccgatttcctcgcggagctggccaattacgagcgcaacgtgaaccgagccgtc
cacaagtacaacgcctacaggcaagcaacctcggggatttcccggtatccaagcaagatc
cagagcggggccgaagccaaaaagctggatggagtaggagctaaaatagctgagaagata
gatgagttcttgtccactgggaagctgcgcaagctggaaaagatccgacaggacgacacc
agtgcatctatcaacctcctgacgcgggtcactggcattggtcctgctgctgctagaaag
tttgttgaagaaggaattaagactttagaagatctcagaaaaattgagcacaagctgaca
catcaccagcagattgggctgaagtattttgaagattttgagaaaagaatcccaagggaa
gaaatgttgcaaatgcaggaaattgtgctggaagaggtaaagaagctggaccccagctac
attgctacagtctgtggcagttttaggcgaggtgcagagtcaagtggtgatatggatgtt
ctcctaacccatcccagtttcacatctgaatcatccaaacagccaaagcttctgcgtcaa
gttgtggaacagctggaaaaagtccactttgtcacagatgtgctgtctaaaggtgaaact
aaattcatgggtgtctgtcagctgcccactaaagaagatggaacagcctttccacacagg
aggattgacatcaggcttatccccaaagaccagtattactgtggggtgctgtatttcaca
ggaagtgacatcttcaacaagaacatgagggctcatgccctggaaatgggcttcaccatc
aatgagtacacgatccgtgccctgggggtcaccggagttgctggggagcccctacctgtg
gaatgcgagaaggacatctttgactacatccagtggcagtaccgagagccaaaggaccgc
agcgaatga
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