Dryobates pubescens (Downy woodpecker): 104302767
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Entry
104302767 CDS
T08526
Symbol
RPA1
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03030
DNA replication
dpub03420
Nucleotide excision repair
dpub03430
Mismatch repair
dpub03440
Homologous recombination
dpub03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104302767 (RPA1)
03420 Nucleotide excision repair
104302767 (RPA1)
03430 Mismatch repair
104302767 (RPA1)
03440 Homologous recombination
104302767 (RPA1)
03460 Fanconi anemia pathway
104302767 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dpub03000
]
104302767 (RPA1)
03032 DNA replication proteins [BR:
dpub03032
]
104302767 (RPA1)
03400 DNA repair and recombination proteins [BR:
dpub03400
]
104302767 (RPA1)
Transcription factors [BR:
dpub03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104302767 (RPA1)
DNA replication proteins [BR:
dpub03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104302767 (RPA1)
DNA repair and recombination proteins [BR:
dpub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104302767 (RPA1)
MMR (mismatch excision repair)
104302767 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
104302767 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
Motif
Other DBs
NCBI-GeneID:
104302767
NCBI-ProteinID:
XP_009901615
LinkDB
All DBs
Position
Unknown
AA seq
616 aa
AA seq
DB search
MSVRLSEGAIAAIMQGENVIKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEQQRLSAQCICQVNRFIVNSLKDGRRVVILMELDVLKTADQVGGNIGNPVPYNEG
EXQGQQRSSAPAANPVPSKPQQQNGSLSVAGPAAPKYHAPSNQFAKPSAPSTVKTPGGSQ
AKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQ
ADKFFPLIELNKVYYFTKGFLKTANKQYTAVKNDYEITFTNDTSVVPCDDAQHLPSVQFE
FVSIAALEETPKDSIVDVIGICKSYEDVTKIVVKANNREVSKRNIHLMDASGKLVTATLW
GNEAERFDGSRQPVVAIKGARVSDFGGRSLSVLSSSTVIINPDSPEAFKLRGWFDSEGQL
LECASISDAKGGPASGVNTNWKTLYEAKAENLGHGDKADYFSCVGTVVHLRKENCMYQAC
PSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLDYQWVTCFQDTAEFILG
QNAAFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAVDIKPVNHRE
YCKRLIASIRRNALLK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcggctgagcgaaggggctatcgcggccataatgcagggggagaacgttatc
aagcccgtgctgcaagtcatcaatacacgggctattgctacaggaaatgggccaccacgt
tacagagtgttgatgagtgatggggttaacacattgtcatcattcatgttggccacgcaa
ctgaactctctggtggaacagcagcgcttatcagctcagtgtatttgccaggttaacaga
ttcattgtcaacagcctgaaagatggcaggagagtggtcatcctgatggagttagatgtt
ctaaaaactgctgatcaggttggtgggaatattggcaatccagtgccatacaacgaaggt
gagtgacaagggcagcagcgttcttcagctccggcagcaaacccagtgcccagcaaacca
cagcagcaaaatggcagtttgtcagtagcaggtcctgctgctccaaagtaccatgcaccc
tcaaaccagtttgctaaacccagtgctcccagcacggtgaagacaccaggaggatctcag
gccaaagtagtgcccattgccagcttgaacccataccagtccaagtggaccatttgtgct
cgcgttacccaaaaaggccaaatccgcacgtggagcaactcccggggtgaagggaaactc
ttctccatagagctggttgatgaaagtggtgagattagagctactgcattcaatgatcaa
gcagacaagttctttccactcattgaattgaacaaggtgtattattttaccaaaggcttt
ttgaagactgctaacaagcagtatacagctgttaagaatgactatgagattacattcact
aatgacacctcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgaa
ttcgtatccatcgctgccttggaggaaacacccaaagactcaattgttgatgtaattgga
atttgtaagagctatgaagatgtcactaaaatcgtagtgaaagctaacaatagagaggta
tcgaagaggaacattcatctgatggatgcatcagggaaactggtgacagctacgctatgg
ggaaatgaggctgagcggtttgatggttccagacaacctgtggtagccatcaaaggagcc
agagtatctgattttggtggtagaagcctatctgttctgtcctccagtacagttatcatc
aaccctgatagcccagaggcttttaagctccgaggatggtttgactccgagggacagctc
ctggagtgcgcctccatctccgatgcgaagggtgggccagcatctggagtaaataccaat
tggaaaactctgtatgaagccaaagctgagaacttgggacatggagataaggcagattat
tttagctgtgtgggcaccgtcgtacatctgcgcaaagagaactgcatgtaccaggcctgt
ccctcccaggattgcaacaagaaagtgatagaccagcagaacggcctctaccgctgcgag
aagtgcgacagggagttccccaacttcaagtaccgcctgatgctcctggtgactattgca
gactgtcttgactatcagtgggtgacttgtttccaagacacagcagaattcattcttggg
cagaatgcagctttcctgggagaactgaaggaaaagaacgaacaggcatttgaagaagtg
ttccaaaatgcaaactttaacacctatgagttcaggatcagagtaaaactggagacttac
aatgatgaatctcgtattaaggctacggcagtggacatcaaacctgtgaaccacagagaa
tactgcaagaggttgattgcaagcatcaggagaaatgctttgctgaagtga
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integrated database retrieval system
