Dryobates pubescens (Downy woodpecker): 104302828
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Entry
104302828 CDS
T08526
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104302828 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpub03041
]
104302828 (PRPF8)
Spliceosome [BR:
dpub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104302828 (PRPF8)
Complex C
U5 SnRNP specific factors
104302828 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104302828
NCBI-ProteinID:
XP_009901681
LinkDB
All DBs
Position
Unknown
AA seq
2398 aa
AA seq
DB search
MPDTTSSVVPLWFRLPPLLRVLMGCACCLRGSAKADWTDSLPVRAAHIRVSEARRQRHGA
AIVVAAVFPYRGGCAPVPNPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMST
LYRLANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGR
TRRALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDI
ATEVAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQG
SWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atgccggacacaacttcctctgtcgtccctctttggttccgcctcccacccctcctccgc
gttctgatgggctgcgcctgctgtctccgaggcagcgcgaaagctgattggacagactcc
ctgcccgtgcgcgccgctcacatccgggtctctgaggcgcggaggcaacggcacggggcc
gccattgtggtggcggccgtcttcccgtaccgcggcggctgcgccccggtgcccaacccg
ctggcgccgttgcccgactacatgtctgaggagaagctgcaggaaaaagcccgcaagtgg
cagcagctgcaggccaagcgctatgcagagaagaggaaattcggcttcgtggacgcgcag
aaagaagacatgccccccgagcacgtccggaagatcatccgcgaccacggtgacatgacc
aacaggaaattccgtcatgacaaacgcgtctacctgggtgctctgaagtacatgcctcat
gctgttctgaagctcttggagaacatgcccatgccctgggaacaaatcagagatgttcca
gttctgtaccatatcacaggcgccatctcctttgtgaatgagatcccctgggtcatagag
ccggtgtacattgctcagtgggggtcaatgtggattatgatgaggcgagagaaaagggat
cggcgtcacttcaagaggatgaggttccccccatttgatgatgaagagccccctctggat
tatgctgataatatcctggatgtggagcccctggaagccattcagcttgagctggatcca
gaggaggatgcccctgtactggactggttctatgaccaccagccgctgaaggacaacagg
aagtatgtgaatggttccacctaccagcgctggcagttcaccttgccaatgatgtccacg
ctgtaccgactggccaaccagctgctcactgacctcgtggatgacaactatttctattta
tttgacctgaaggccttctttacttccaaggcactgaacatggctattcctggaggtccc
aagtttgagcctcttgttagagacatcaaccttcaggatgaggactggaatgaatttaat
gacatcaacaagattatcatcaggcagcccatcaggacagagtacaaaatcgctttccca
tacctgtacaataacctgccacaccacgtccacctcacctggtatcacactccaaacgtg
gttttcattaaaacagaggatcctgatctcccagctttctacttcgatccactgatcaac
cctatctcacacagacattctgtcaagagccaggaaccgttgcctgatgacgatgaagag
tttgagttgccagagtttgtggaacctttcctgaaggataccccactctacacagataac
acagccaatggcattgctctgctgtgggccccacgacccttcaacttgaggtctgggagg
actcggagagctcttgatatcccactggttaagaattggtaccgtgagcactgcccggca
ggccagccagtgaaagtgagagtctcctaccagaagttactgaaatactatgttctaaat
gcactcaagcacagaccccccaaggcccagaagaagaggtacctcttccgctccttcaaa
gctacgaagtttttccagtcgacgaagctggactgggtggaagttggcctgcaggtgtgt
cgccagggctacaatatgctgaacttgctgatccacagaaagaacctgaactacctgcac
ttggattacaacttcaacctgaagcctgtgaagaccctcaccactaaggaaaggaagaaa
tctcgttttggtaatgctttccatctgtgccgagaggttctgcggctgaccaagctggtg
gtggacagccacgtccaatacagacttggaaatgtggatgccttccagttggcagatggt
ttgcagtacatctttgcccacgtgggtcagctgacaggaatgtaccgatacaagtacaaa
ctgatgaggcagatccgtatgtgcaaggacctgaaacatctcatctactacaggtttaac
acaggtcctgtgggcaaaggtcctggctgtggcttctgggctccaggatggagagtgtgg
ctattcttcatgaggggcatcacaccgctgctggagcgctggctggggaatctgctggcc
aggcagtttgaaggccgtcactccaagggtgtagcaaagactgtcacaaagcagcgtgtg
gagtctcactttgacctggagctgagggcagctgttatgcatgacatcctggacatgatg
ccagaaggaatcaaacagaacaaagccagaaccatcctgcagcatctgagcgaggcttgg
cggtgctggaaagccaatatcccctggaaggtgccagggctgccaactcctattgagaac
atgatcctgaggtatgtgaaggcaaaagccgactggtggacaaacacagctcactacaac
agggagcggatccgccggggtgccactgtagacaaaacggtctgcaagaagaacctgggc
cggctgaccaggctctacttaaaagctgagcaggaacggcaacataattacctgaaggac
gggccttacatcactgcggaagaggctgttgctgtgtacaccaccacagtgcactggctg
gaaagcaggaggttctcgcccattcctttccccccgctgtcctacaagcacgacaccaag
ttgctcatattagccctggagaggctgaaggaagcttacagtgtgaaatctcgcctgaac
cagtcacagagagaggagctgggcttgattgaacaggcttatgataacccccatgaagct
ctgtccagaatcaaacgacaccttttaactcagagagccttcaaggaggtgggtattgag
ttcatggatctctacagccacttagttcctgtttatgatgttgagcccctggagaaaatc
acagatgcttacctggatcagtacttgtggtatgaagccgataagcgaaggctcttccct
ccatggatcaaacctgctgacactgaacctcctccactgttggtgtacaagtggtgccaa
ggcattaacaatctccaagatgtttgggaaacaagtgagggtgaatgcaacgtgatgctg
gagtcccgcttcgagaagatgtatgagaagattgacctgaccttgctcaacaggctgctg
cgtctcatcgttgatcacaacattgctgactacatgacagccaagaacaacgtggtgatc
aactacaaggacatgaatcacacaaactcttatggaattattcgtgggctgcagtttgct
tccttcattgtccagtactatgggcttgtgatggacttgctggtgctgggtctgcaccgt
gccagtgagatggctgggcctccccagatgccaaatgacttcctgagcttccaagacatt
gccaccgaggtggcccatcccatccgcctcttctgcagatacatcgaccgtatccacatc
ttcttcaggtttacagcagatgaggccagagacttgattcagcgatacctgacggagcat
ccggatcccaacaacgagaacatcgtcggctacaacaacaagaagtgctggccccgcgac
gctcggatgcgcctcatgaaacacgacgtgaacctcggtcgtgccgtgttctgggatatc
aagaaccgcctgcctcggtcggtcaccacggtgcagtgggagaacagcttcgtgtcggtg
tacagcaaggacaaccccaacctcctgttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgccgtaccagctacgaggagttcacccacaaggacggtgtctggaacctgcaa
aatgaggtcaccaaggagcgcacagctcagtgcttcctgcgtgtggatgatgagtctatg
cagagatttcacaacagagtgaggcagatcctcatggcatctggctccacaaccttcact
aagattgtcaataaatggaatacagctctgattggcttgatgacatacttcagggaagct
gttgtgaatactcaggagctgcttgatttgctggtgaaatgtgagaataaaatccagact
cggatcaagattggtctgaactccaaaatgcccagccgcttcccacccgtggtgttttac
acccctaaagagctggggggcctgggcatgctctccatgggccacgttctcatcccccag
tctgacctgaggtggtccaagcagacagatgttggcatcactcacttccgctcgggcatg
agtcacgaggaggatcagctcatcccaaatctctaccgttacatccagccctgggagagc
gaattcatcgactcgcagagggtgtgggcagagtacgccctgaagcgacaggaggccata
gcccagaacaggcgtctgacgctggaagacctggaggactcgtgggacaggggcatccct
cgtatcaacaccctcttccagaaggacaggcataccctggcttatgataaaggatggaga
gtcaggactgacttcaaacagtatcaggtcctgaagcagaaccctttctggtggacacat
cagcgccacgatgggaaactctggaacctgaacaactaccgcacagatatgatccaggca
cttgggggagtggaaggcatcctggagcacactctcttcaagggcacttacttcccaacg
tgggagggtctcttctgggagaaggccagtggctttgaggagtccatgaagtggaagaag
ctgacaaatgcccagaggtcgggtttgaaccagattccaaacagaagattcaccctgtgg
tggtctcctaccattaacagagctaatgtgtatgttgggtttcaggtgcagctggatttg
acaggcatcttcatgcacggcaagatccccacgctgaagatttctctcattcagattttc
cgagctcacttgtggcagaagatccacgagagcattgtgatggatttgtgtcaggtgttt
gatcaagagctggatgctctggagattgagacagtgcagaaggagacaatccatcccagg
aagtcatacaagatgaattcctcctgtgcagatatcctcctctttgcttcctacaagtgg
aatgtgtcacggccatcactgctcgcagattccaaagatgtgatggacagcaccaccact
cagaagtactggatagacatccagctgcgctggggagattacgactcccacgacatcgag
cgctatgccagagccaagttcctggactacaccacagacaacatgagcatctacccttct
cccactggtgtgctcattgccattgatctggcctacaacttgcacagtgcttatgggaac
tggttcccagggagcaaacctctgatccagcaggctatggccaaaatcatgaaggcaaac
cctgcgctgtatgtgttgagagaacgaatccgcaagggcctgcagctgtactcgtccgag
cccacagagccatacctctcctcccagaactatggagagctcttctccaaccagatcatc
tggtttgtggatgacaccaacgtgtacagagtgaccatacacaagacttttgaagggaat
ttgaccacaaagcccatcaatggagccattttcatcttcaaccccagaactggacagctc
ttcctgaagatcatccatacgtctgtgtgggcaggacagaaacgtctaggacagctggct
aagtggaagactgctgaagaagtggctgctttgattcggtctcttcctgtggaggaacag
cctaagcagatcatagtgacacggaagggcatgttggacccacttgaggtgcacttgctg
gatttccctaatattgtgatcaaaggctcagagctgcagctgcccttccaggcctgtctg
aaggtggaaaagtttggtgatctcatcctgaaggctactgaaccccagatggttctcttc
aatctctatgatgactggctgaaaaccatctcttcctacacggccttctctcgtctgatt
ctgattctccgggcactgcatgtgaataacgaccgagccaaagtcattctgaagccagac
aagacaaccataacagagcctcaccacatctggccaaccctgacagatgaggagtggatc
aaggtggaggtgcagctgaaggatctcatccttgctgactatggcaagaagaacaacgtg
aacgttgcatccctcacccagtcagagatccgagacattatcctgggcatggagatctct
gctccctctcagcagagacagcagattgcagaaattgagaagcaaaccaaggagcagtcc
cagctgacagccacgcagacccgcaccgtcaacaagcacggggatgaaatcatcacctcc
accaccagcaactacgaaacccagaccttctcctccaagacagagtggcgagtcagagca
atttctgctgccaacctccacctgcgaacgaaccacatctacgtctcctcagacgacatc
aaggagacaggctacacctacatcctgcccaagaacgtcctgaagaagttcatctgcatc
tcagacctgcgggcccagattgcagggtacctgtatggagtgagcccccctgacaacccc
caagtgaaggagatcagatgcattgtgatggtgccccagtggggaacacaccagactgtg
catctccctgggcagctgccacagcatgagtatctcaaggaaatggaacctttggggtgg
attcacactcaaccaaatgagtcccctcagctctcaccacaggatgtcaccacccatgcc
aaggtcatggctgacaacccctcctgggatggggagaagaccatcatcatcacctgcagt
ttcacaccaggctcctgcaccctgacagcctacaagctgacccccagtggctatgagtgg
ggcaggcagaacacggacaagggaaacaaccccaagggctacctcccatcccactatgag
agggtgcagatgctgctttcagatcgcttcctcggcttcttcatggtcccagcacagggg
tcctggaactacaacttcatgggtgttcgtcacgaccccaacatgaagtacgagctgcag
ctggccaaccccaaggagttctaccacgaggtccatcgcccttctcacttcctcaacttc
gccctgctgcaggagggggaggtctactctgccgaccgggaggacctctacgcctag
DBGET
integrated database retrieval system
