KEGG   Dryobates pubescens (Downy woodpecker): 104302982
Entry
104302982         CDS       T08526                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
dpub  Dryobates pubescens (Downy woodpecker)
Pathway
dpub03030  DNA replication
dpub03410  Base excision repair
dpub03420  Nucleotide excision repair
dpub03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dpub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104302982 (RFC4)
   03410 Base excision repair
    104302982 (RFC4)
   03420 Nucleotide excision repair
    104302982 (RFC4)
   03430 Mismatch repair
    104302982 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dpub03032]
    104302982 (RFC4)
   03036 Chromosome and associated proteins [BR:dpub03036]
    104302982 (RFC4)
   03400 DNA repair and recombination proteins [BR:dpub03400]
    104302982 (RFC4)
DNA replication proteins [BR:dpub03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104302982 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    104302982 (RFC4)
Chromosome and associated proteins [BR:dpub03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104302982 (RFC4)
DNA repair and recombination proteins [BR:dpub03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104302982 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    104302982 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_30 AAA_16 AAA_22 AAA_11 DUF815 SLFN-g3_helicase Mg_chelatase AAA_24 AAA_14 RuvB_N AAA_19 AAA_28 TIP49_C AAA_5 DNAX_ATPase_lid AAA_7 bpMoxR ResIII AAA_3
Other DBs
NCBI-GeneID: 104302982
NCBI-ProteinID: XP_009901851
LinkDB
Position
Unknown
AA seq 365 aa
MQAFLKGPSAISTKPPAAKEKGPAGSAGSSGESKRLKPIPWVEKYRPKNVDEVAFQDEVV
AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVI
REKVKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI
CNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEKEHVKISSEAVSYLVKVSEGDLR
KAITFLQSATRLMGGKEITEKIVTEIAGVIPKETIDELLSVCGSGSFEKLETLAKDLINE
GYAVAQLVNQLHDAVVESEDYSDKQKSVIVEKLAEVDKCLADGADEYLQLVSLCALVMQQ
LTQNT
NT seq 1098 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaaaggcccgtctgccatcagcaccaagcctcctgctgccaaagag
aaaggcccggcaggctcagctgggagcagcggggagagcaagaggctcaaacccatcccc
tgggtggaaaaataccgccccaaaaacgtggatgaagttgctttccaggatgaagttgtt
gctgtgctgaaaaagtccttggaaggtgctgatcttcccaatctgttgttctatggccca
cctggaactggaaaaacttccactattttagcagctgctagagaactctatgggcctgaa
ttattccggcaaagagtccttgaattaaatgcttctgatgagcgtggaatacaagtgatt
agggaaaaagtgaaggcttttgctcagctaactgcatctggaagccgctcagacggtaaa
atgtgtcctccttttaaaattgtgatactggatgaagcagactcgatgacttcagcagcc
caggcagccttaagacgcacaatggaaaaagaatctaagacaacacgtttctgccttatt
tgtaactacatcagcagaataattgaacctttaacatctcgatgctccaaattccgcttc
aagcctttgtcggacaaaatccaacagcagaggctattggacgttgctgagaaggaacat
gtgaagattagtagtgaggcagtgtcataccttgttaaggtgtcagagggggacttaagg
aaagcaattacttttcttcaaagtgccactcgcctaatgggtgggaaagagatcacagag
aaaatagtcactgaaattgctggggtcatccctaaagaaacaattgatgaactgctgtct
gtctgtgggagtggttcatttgagaagctggaaacgctggcaaaggatctcataaatgaa
ggatatgctgttgctcagcttgtgaaccagctgcatgatgctgttgttgagagtgaagat
tacagcgacaagcagaaatccgttatagtcgagaagcttgcagaagtagacaaatgcttg
gcagatggtgctgatgagtacttgcagttggtgagtctctgtgcccttgtgatgcagcag
ctaacacaaaacacttaa

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