Dryobates pubescens (Downy woodpecker): 104304104
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Entry
104304104 CDS
T08526
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104304104 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104304104 (CPSF2)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104304104 (CPSF2)
U7-dependent histone pre-mRNA processing factors
104304104 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
104304104
NCBI-ProteinID:
XP_009903114
UniProt:
A0A093GU84
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL
SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRTT
PGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPTVHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGEEPMDQDLSDVPTKCISATESMEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELREDEELE
MQMDVPSSDSSVVAQQKAMKSLFGDDDKEMCEESEIIPTLEPLPPHEVLGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCPDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgattatcaagttgactacgctgtcaggggtgcaggaggaatctgctctttgc
tatctgttgcaagtcgatgaatttcgttttctcttggactgtggctgggatgaaaacttt
tctatggatattattgattctctgaggaaacatgtacaccaggttgatgctgttcttctt
tctcatcctgaccctctacaccttggtgctcttccttatgcagttggaaaaatgggattg
aattgtgccatttatgcaactattcctgtatataaaatgggacagatgtttatgtatgat
ctctaccagtcccgccataatactgaggatttcactctctttaccttggatgatgtagat
gcagcctttgataagatacagcagctgaagttttctcagattgtgaacttgaaaggcaaa
ggacatggtttgtcaatcaccccattgccagctggccacatgataggaggcacaatttgg
aaaattgtcaaggatggagaagaagaaattgtttatgcagttgatttcaaccacaagagg
gagatccacctgaatggatgttccttggaaatgctgagcaggccttcattgcttattaca
gattcatttaatgctacgtatgtacaacccaggaggaaacaaagggatgaacagttactg
actaatgttttggagacattacgaggtgatggaaatgtattaatagctgtggatacagca
ggcagagttctggaacttgctcaacttcttgatcagatctggagaacgaaagatgcaggc
ttaggagtctactctctagcacttttaaataacgtcagctacaatgtagtggagttctct
aaatcacaggttgaatggatgagtgacaagttgatgagatgctttgaagacaagagaaac
aatccttttcagttccgccatctctccttatgtcatagcctgtctgatctggctcgagtg
cctagtccaaaagttgttcttgccagtcaacctgacttagagtgtggtttttctagagat
cttttcattcagtggtgccaggattccaaaaactctataattttaacttaccgcactaca
cctggaacattggcacgattcttgattgataatccttctgaaaaagttatagatattgag
ctgagaaaacgtgtcaagctggaaggaaaagaacttgaagaatacttagaaaaggagaaa
ctaaaaaaggaagcggctaagaagttagaacaatccaaagaggcagatattgattccagt
gatgagagtgatgttgaagaggatattgatcagccaactgtacataagaccaaacatgat
ttgatgatgaaaggtgaaggtagccggaaaggaagcttcttcaaacaggcaaagaaatct
tatccgatgtttccagcccctgaagaaagaattaaatgggatgaatatggcgagattatc
aaacctgaggattttctagttccagaacttcaagcaacagaagaagaaaaaagcaaatta
gaatctggtttgacaaatggagaagagcctatggaccaggatttatcagatgttcctacc
aaatgtatttctgcaacagaatccatggaaattaaagccagagttacatacattgactat
gaaggacgctccgacggggactcaattaaaaaaatcatcaaccaaatgaagccaaggcag
ctgatcattgtccatgggccacctgaagcgagtcaggaccttgcagaatgttgcagagcg
tttggtggaaaagatattaaagtttacatgccaaaactacatgaaactgtagatgcaacc
agtgaaactcacatttatcaggtcaggttaaaagattctctggtcagttcccttcagttc
tgtaaagccaaggatgctgagctggcttggatagatggtgttctggacatgcgggtttca
aaagtggatactggagttattttggaagagggagagctaagggaagatgaagaattagag
atgcaaatggatgtcccttcatcagactccagtgttgttgcacagcagaaggccatgaaa
agcctctttggtgatgatgacaaggagatgtgtgaggagagtgagatcattcctacttta
gaacctctgccacctcacgaggttcttggacatcagtctgtgtttatgaatgagccaagg
ctctctgacttcaagcaagttcttttgcgagaaggtatacaagctgagtttgtaggagga
gtgcttgtgtgcaacaatctggtggctgttcgcaggactgaaacagggcgcattggactg
gaaggctgtctctgcccggacttctataggataagagaccttttatacgagcaatatgct
attgtttga
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