Dryobates pubescens (Downy woodpecker): 104304641
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Entry
104304641 CDS
T08526
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104304641 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104304641 (CNOT1)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104304641 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104304641 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
CNOT1_HEAT
CNOT1_1st
DUF3819
Motif
Other DBs
NCBI-GeneID:
104304641
NCBI-ProteinID:
XP_009903707
LinkDB
All DBs
Position
Unknown
AA seq
2277 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNHRASQXXXXQIVSRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIEAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRSIIMQFGVREVTAAQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHMVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQSTGFSGIGGLSSQLPVGG
LSTGSLTGIGTGALGLPAVNSDPFVQRKLSTSGLSQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTITITRPTGXXXXXPLQPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTA
ASPQQRDMMEQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRR
YCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPM
KQAWATDDVAQIYDKCMTELEQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAAL
GLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRD
EYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHV
TEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQA
SEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF
RLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTK
INLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAF
CNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFL
RNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRN
MRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSN
LQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLD
TEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHP
WGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
6834 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaacctg
accaagaaaaaccacagagccagccagnnnnnnnnnntgcagatcgtgagcaggcacggc
cccgaggcagaccggcacttactgcgctgcctcttctcccacgtggatttcagtggcgat
ggtaaaagcagtggcaaagactttcatcagactcagtttctgatccaggagtgtgcctcg
ctgatcacaaagccaaactttatctccacgctgtcctacgccattgacaaccccctgcac
taccagaagagcctgaagccttcaccccatttgtttgcccagctgagtaaagtcatcaaa
ctaagcaaagttcaagaggtgatcttcggcctcgcgctcctgaactccttcagctcggat
ctgcgcgggtttgctgcccagttcatcaagcagaagctgccggacctcctgcgctcctac
atcgacgccgacgtcagcggaaaccaggaaggtggcttccaagacattgcaatagaagtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gagcaaattgaggccttcctcaaaacattgcgtagagatttcccccaggagcgctgccct
gtggtgcttgcaccacttctctaccctgaaaaacgggacatcctcatggacaggatcctg
cctgactccggaggcatagccaaaaccatgatggagagctccctggcagacttcatgcag
gaggttggctatggcttttgtgcaagcgtggaggagtgccgcagcatcatcatgcagttc
ggcgtgcgggaggtgaccgcggcccaggtcgccagggtgctggggatgatggcgcggacg
cactcggggctcagcgacggcatccccctgcagtccatttctgctcctggcagtgggatt
tggagtgatgggaaggacaaaagcgatggggcccaagcccatacctggaatgtggaggtc
ctgatcgatgtgctcaaagagctgaaccccagcctggacttcaaggtagtcacctacgag
ctggaccacccaggcttccagatccgggacagcaaggggctgcacatggtggtgttcggc
atccagaggggcctgggcatggaggtcttccctgtcaacgccatttacaggccttggaag
catgcagagggccagctctccttcatccagcactccctcatcaaccctgacatcttctgc
tttgctgactacccctgtcacactgttgccacagacatcctgaaggcaccgcccgaggac
gacaaccgggagatcgccacctggaagagcctggacctgatcgagtccctgctgcgcctg
gcggaggtggggcagtacgagcaggtgaagcagctcttcagcttccccatcaagcactgc
ccagacatgctggtgctggccctgctgcagatcaacacctcctggcacaccctgcgccac
gagctcatctccacgctcatgcccatcttcctgggcaaccatcccaactctgccatcatc
ctgcactatgcctggcacggacagggccagtccccctccatccgccagctgatcatgcat
gccatggcggagtggtacatgaggggggagcagtacgaccaggccaagctctcgcggatc
ctcgatgtggcacaggacttgaaggccctgtccatgctgctgaacgggaccccctttgcc
ttcgtcatcgacctggccgccctggcctcccgccgcgagtacctcaagctggacaagtgg
ctgacggacaagatccgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgtccctctatcctgggtggccttgctccagaaaaagatcagcccaaaagt
gctcagctgcctccagaaaccttggcaactatgctggcatgtctgcaggcctgtgctggg
agtgtttcccaggagctgtcagagaccattctcaccatggtggctaactgcagcaatgtc
atgaacaaggccaggcagcccccccctggggtcatgcccaaaggacgcccccccagcgcc
agcagcttggatgccatctcccctgtgcagatcgactccctggcaggaatggcatctctt
agcttgggaggctcagctgctcctcacacccagagcatgcaaggcttccctcctaacctg
ggctctgccttcagtactcctcagtcaccagcaaaggccttcccccctctctccacccag
aaccagagcacagggttcagcggcatcggaggactctcttcacagctcccagtaggtggc
ctcagcacggggagcctgaccggcataggaaccggagccctgggcctgcccgcggtgaac
agcgaccccttcgtgcagaggaagctgagcacctctggactgagccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaaccagcacttt
agcaaagaaattgatgatgaggcaaacagctacttccagaggatctacaaccacccccca
caccccaccatgtctgtggatgaggtgctggagatgctgcagcgcttcaaggactccaac
atcaagcgggagagagaggtcttcaactgcatgctgcggaacctgttcgaggagtatcgc
ttcttcccccagtacccagacaaggagctgcacatcactgcctgcctctttgggggcatc
attgagaagggcctggtgacctacatggccctggggctggcgctgcgctacgtgctggag
gccctgcgcaagcccttcgcctccaagatgtactacttcggcatcgccgcgctcgatcgc
ttcaagaacagactgaaggactacccccagtattgtcagcacttggcttctattagtcac
tttatccagttcccacatcacttgcaggagtacatagagtacggccagcaatccagagac
cctcctgtgaagatgcagggctccatcaccacccctggcagcattgcacttgcccaggct
caggcccaggcccaggtcccagcaaaggctcctcttgctggccaagtcagcactatggtc
accacctccaccaccaccaccgtggccaaaaccatcacaatcactcggcccaccggnnnn
nnnnnnnnnntccccctgcagccttccatcaataccaccaacattgataccctgctggta
gcaacagatcagactgagaggattgtggagcctccagagaacgtccaggagaagattgct
ttcatcttcaacaatctgtctcagtccaacatgacccagaaggttgaagagctgaaggaa
acagtgaaagaggagtttatgccctgggtgtcccagtaccttgtgatgaagagggtcagc
attgagcccaatttccacagcctctactcaaacttcctggacaccctgaagaacccagag
ttcaataaaatggttctgaatgagacctacaggaacatcaaggtgctcctgacatcagat
aaggctgcagccaacttctcagaccgttccttgctgaagaacctggggcactggctgggc
atgatcaccctggctaagaacaaacccatcctgcacacggatttggatgtgaagtccctg
ctgctggaggcctatgtgaaggggcagcaggagctgctctatgtggtgccatttgttgcc
aaggtcctggagtccagcgtcaggagcgtggtcttcaggcctcccaacccctggacaatg
gcaatcatgaatgttttggctgagctgcaccaagagcacgatctgaaactgaacctgaag
tttgagatcgaggtgctctgcaagaaccttgccctggacatcaacgagctgaagcctggc
agcctgctgaaggacaaggaccgcctgaagaacctggatgagcagctctctgctcccaag
aaggatgtgaagcagccagaagagctcccacccatcacaaccaccactgcttctacaact
ccagctaccagcaccacctgcacagccacagtgcccccccagccccagtacagctaccac
gacatcaatgtctactccctgggcggcttggctccgcacatcaccctcaaccccacggca
gcctccccacagcagagggacatgatggagcaggcagctgcccagctggcacaggacaac
tgtgagctggcctgctgcttcatccagaagacggcggtggagaaggcaggccccgagatg
gacaagaggctggccactgaatttgagctcaggaagcatgccaggcaggaggggcggcgc
tactgcgaccccgtggtgttaacctaccaggctgagaggatgccagagcagatccggcta
aaggttggaggtgtggacccaaagcagctggctgtttatgaggagtttgcacgcaatgtc
cctggcttcctgcccaccaatgacctcactcagcccacaggcttcttggctcagcctatg
aagcaggcttgggctacagatgatgtagcccagatctatgacaagtgcatgacagagctg
gagcagcacctgcagtccattccccacaccctggccatgaaccctcaagcccaggccctg
cgcagcctgctggaggccgtggtggtggctcggaactcccgtgacgccattgctgctctt
gggctcctgcagaaggctgtagagggcttgctggatgccaccagcggggcggacgccgac
ctgctgctgcgctaccgcgagtgccacctgctggtgctgaaggccctgcaggacggccgt
gcctacggatccccctggtgcaacaagcagattaccaggtgcctgatcgagtgcagggac
gagtacaagtacaacgtggaggccgtggagctgctcatccgcaaccacctcgtcaacatg
cagcagtatgacctgcacttggcccagtccatggagaatggcctgaactacatggccgtg
gctttcgccatgcagttggtcaagatcctgctggtggatgagaggagcgtggcccacgtg
acagaggcagatctcttccacaccattgagacactcatgaggatcaatgctcattccaga
ggaaatgcccctgaagggttgccccagctgatggaagtggtccgctccaactacgaagcc
atgattgaccgagcccatgggggccctaacttcatgatgcattcaggaatatcccaagcc
tctgagtatgatgatccccctggcctgagggagaaggcagagtacctgctgagggagtgg
gtgaacctctaccactcggctgcagctggccgcgacagcaccaaagccttctcggcgttt
gtcggacagatgcaccagcagggcatcctgaagacggacgacctgatcacgcgcttcttc
cggctgtgcaccgagatgtgcgtggagatcagctaccgcgcccaggccgagcagcagcac
aaccccgccgccaaccccaccatgatccgcgccaagtgctaccacaacctcgacgccttc
gtgcggctgatcgccctgctggtgaagcactccggggaggccaccaacaccgtcaccaag
atcaacctcctcaacaaggtcctgggcatcgtggtgggagtgctgctgcaggaccacgac
gtgcggcagagcgagttccagcagctgccttaccaccgcatcttcatcatgctgctgctg
gagctcaacgccccggagcacgtcctggagaccatcaacttccagaccctcacagctttc
tgtaacacatttcacatcctgaggcctaccaaagctccaggctttgtttatgcctggctg
gaactgatctcccaccggatctttattgcgagaatgctggcacataccccacagcagaag
ggctggccaatgtatgcccagctgctgattgacctcttcaagtacctggctccctttctt
cggaacgtggaactcaccaaacctatgcaaatcctctacaagggcaccctgcgtgtgctg
ctggtcttgctgcatgacttcccagagttcctctgtgactaccactatggcttctgtgat
gtgatccctcccaactgcatccagctgaggaatctcatcctgagtgccttcccacgcaac
atgaggctgccagaccccttcacccccaacctgaaggtggacatgctgagtgagatcaac
attgctcctaggatactcacaaacttcactggggtgatgcctcctcagttcaagaaggac
ctggactcctatctcaagactcgctctccggtcaccttcctctccgacctgcgcagcaac
ctccaggtctccaacgagcctggcaaccgctacaacatccaactgatcaacgccttggtg
ctctacgtcgggacccaggcgattgctcacatccacaacaagggcagcaccccctccatg
agcaccatcacccactcagcacacatggacatcttccagaacctggcagtagacctggac
actgaaggccgatacctcttcctgaacgccatcgccaaccagctgcgctaccccaacagc
cacactcactacttcagctgcaccatgctctacctgtttgctgaggccaacactgaggcc
atccaggagcagatcacaagggttctcttggagagactgattgtaaataggcctcatccc
tggggtctcctcatcactttcattgagctgatcaagaacccagcttttaagttctggaac
catgaatttgttcactgtgctccagagattgagaagttgttccagtcggttgcacagtgc
tgcatggggcagaagcaggcccagcaagtcatggaagggactggtgccagttag
DBGET
integrated database retrieval system
