Dryobates pubescens (Downy woodpecker): 104304836
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Entry
104304836 CDS
T08526
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104304836 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpub03021
]
104304836 (POLR1A)
Enzymes [BR:
dpub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104304836 (POLR1A)
Transcription machinery [BR:
dpub03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
104304836 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
HMG_box
Motif
Other DBs
NCBI-GeneID:
104304836
NCBI-ProteinID:
XP_009903918
LinkDB
All DBs
Position
Unknown
AA seq
1662 aa
AA seq
DB search
MVPVLLVVRMIVLRWKLSVKQITNAQYLDSVGNPAANGLYDLALGPPNSREVCATCMQSF
SNCPGHFGHIELPLTVYNPLFFDKLFLLIRGSCLNCHMLTCTRAVVHLLLSQLKVLEKGL
LHAVHDLEVILNRFLEQCADATSSEIEEELNQHVQEMLESHQLRDQCSNVKNVCECRNKL
IAEFWKTHMSSKKCPHCKSRRSLVRKEHNSKLTVTYPSAVYSKAGDKGLDEPAALDDSQL
GKRGYLTPITAKQYIMALWKNEGFFLRYLFPGMDPQESSGFSPDMFFLDLLVVPPSRYRP
MHRGNMYSTNSSPPAFILAWKAGESGEALDRSVLATIPGQSLADKLYNAWIRLQSHVNIV
FDSDMDKLATEKYPGIRQLLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMV
FATKLTYPQPVTPWNVKELRQAVINGPKAHPGASMVINEDGSRTVLSATSLTQREAIAKQ
LLTPSSGAAQSGLKIVCRHIRNGNVVLRNRQPTLHRPSIQAHRARILHGEKVLRLHYANC
KAYNADFDGDEMNAHFPQSELGRAEAYTLACTDEQYLVPKDGKPLPGLIQDHMISGVSMT
IRGCCFTREQYMELVYRGLTDKTGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPEDQIP
LNLTGKAKIGGRAWVKGPANKCLKLDSMCESQVVIRNGELLCGVLDKAHFGSSAYGLVHC
CYEIYGGATSGKVLTCLGRLFTAYLQLYRGFTLGIEDILVKPEADEKRDKIIERSRQGGV
GAVRAALNLPEAALCEEVQGKWQDAHLCKDQRDFNMVDLKFKEEVNSYNNEVNKVCMPHG
LHRSFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFS
PSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD
LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIADNYEVIQKTNHLDEALARMESHR
ANQQFKAIKKWQARHQNSGQRQGGFLTFSQKKLASVKAQIPEGEIKNGRDPVTLQLLKMW
YELDEKKRSKYLKKAARCPDPSLGLWRPDTHFASVSETFEKGVADYVSKWESEGKRSCVH
PALPSYRLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG
IPRLREILLVAGANIKTPTMSVPVFNTKKALKKVKQLKKQLTRVCLAEVLQKVEIEESLR
MQCEQDRHRLCKVRFHFLPHHCYRAEKSVKPRQILHFMETRFFKLLLDAIKKKSAKMESF
TAVSAWRATHKDVDSDQDKSLHEAPAEEEENIVDADPDEGDGDATEAKRRKKQEEEVDYE
SEEEKEEENMDENLEGEEAESEEEERPPGAEDESAAAGAAWLLPPASQARRERGRWAQSA
ELRVNAVLESHPSIQGYSFDTENDLWCEVSLRLPLLKVYFDLSSLLASLARSTVIHEVKG
ITRCLLQEGTARHGGKELVLHTEGINLSELFRYSDILDLNRLYSNDIHAMAKNYGIETAL
RVIIKEIKDVFAVYGIAVDPRHLSLVADYMCFEGCYRPLSRLGIQSSASPLQQMTFETSY
KFLKEATMMGAHDELRSPSACLVVGKVVKGGTGLFDLKQPLR
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atggttcctgtgttactggtggtacgaatgattgtgctcagatggaaactgagtgtgaaa
cagatcaccaatgctcagtatttggacagtgtggggaatccagctgctaacgggctgtac
gacctggctttgggccctcccaactccagagaagtgtgtgcaacctgcatgcagagcttc
agcaactgccccgggcattttggccacatagagctgccactgactgtctacaatcctctc
ttctttgataaattgttcctcctgatccgaggctcctgtttgaactgccacatgctgacc
tgcacccgagctgtggtgcacctgctgctgagccagctgaaggttctggagaagggcttg
cttcatgctgtccacgatctggaggtcattctgaacaggtttttagagcagtgtgcagat
gcaacgagctcagaaatcgaagaagagttaaatcagcacgttcaggaaatgctggagagc
caccagctaagggatcagtgctcaaatgtcaaaaatgtttgtgagtgtaggaataaactg
atagcagagttctggaaaacacacatgagttccaagaaatgcccacactgcaaatccagg
agatccttggtgcggaaggagcacaacagcaagctgacagtgacctacccctctgcagtc
tactccaaggcaggggacaaaggcctggatgagcctgcagctcttgatgacagccagctg
gggaagagaggctacctgacccccatcactgccaagcagtacatcatggctctgtggaag
aatgaaggtttctttttgcgctatctcttccctgggatggatccccaggagagttcagga
ttcagtccagacatgttctttttagatctacttgtggttccaccctcaaggtaccggccc
atgcaccggggaaacatgtacagcacaaacagctcaccaccagccttcatcctggcttgg
aaggccggagagagcggtgaggctctggaccgttccgtcctggcgacgattccaggccag
agccttgcggataagctgtacaacgcctggattcggctccagagccacgtcaacatcgtg
tttgacagtgacatggacaagctggcgacggagaagtaccctggcatccggcagctgctg
gagaagaaggagggactgttccgcaagcacatgatgggcaagcgcgtggacttcgccgcc
cgctctgtcatctgccccgacatgtacattggcaccaacgagattggcatccccatggta
tttgctaccaaactgacttaccctcagccagtcaccccctggaatgtcaaagagctgagg
caggctgtcatcaatggcccaaaggctcaccctggggcctccatggtcatcaatgaagat
ggatctcgcacagtgctgagcgccaccagcctgacccagagggaagccatagctaagcag
ctcctcactccttcctcaggtgctgcccagtcaggcctgaagattgtgtgtcgccacatc
cggaacgggaacgtggtgctgcggaaccggcagcccacgctgcacaggccctccatccag
gcgcaccgtgcccgcatcctgcacggggagaaggtgctgcggctgcactacgccaactgc
aaggcctacaatgccgacttcgacggcgatgagatgaacgcccacttcccccagagcgag
ctgggcagggcagaagcctacaccttggcctgcactgatgagcagtatctggttccaaag
gacgggaagccacttcccggcttgatccaggaccacatgatttctggggtcagcatgacc
atccggggctgctgcttcaccagggagcagtacatggagctggtttacagagggctcaca
gacaagacaggaagaattaaaacctttcctccagccatcatgaaaccacagcgcttgtgg
acaggaaagcaggttgtctccaccttgttaattaacatcatcccagaagaccagatcccg
ctgaatttgactgggaaggctaagattgggggaagagcctgggtaaagggacctgcaaac
aaatgtctgaagctggactccatgtgtgaatctcaggttgttattagaaatggggagttg
ctgtgtggagtcctggacaaagctcactttggcagctctgcctacggcctggtccactgc
tgctatgagatctatgggggtgccaccagcgggaaggtgctgacgtgcctgggccggctc
ttcactgcctacctgcagctctacaggggtttcacactggggattgaagatatcttggtt
aagcctgaagcagatgagaaaagagacaaaatcattgagcggtcacggcagggtggtgtt
ggggctgttagagctgctcttaatttgccagaagcagctttgtgtgaggaggtgcagggg
aaatggcaggatgcccatctctgcaaagaccagagggacttcaacatggttgatctgaag
ttcaaggaggaagtgaacagttacaacaatgaagttaacaaggtttgcatgccccatggc
ctccacaggagctttccagagaacaacttgcagctgatggtgcagtcaggcgccaaagga
tccactgtgaacacaatgcagatttcctgtttgctgggccagatcgagttggaaggccgc
aggcccccactgatggcatctggcaaatcgctgccctgcttccagccttacgacttctcc
cctagctcaggagggtttgtgactggcaggttcctcactgggatcaaaccttctgagttc
ttcttccactgcatggctggcagggaaggtcttgtggatacagctgtcaaaaccagccgg
tctggctacctgcagaggtgcatcatcaaacatttggaagggctggtggttcagtatgac
ctgaccgtacgagacagtgatggcagtgtggtgcagttcctgtatggagaggatgggctt
gacatccctaaaacccagttcctacagcctgagcagtttcctttcattgcagacaactat
gaggtaatccagaagacaaaccatctggatgaagctttagcaaggatggagtctcaccga
gctaaccagcagttcaaagccatcaagaagtggcaagccaggcaccaaaactctgggcaa
agacaaggaggcttcctcaccttttcccagaagaaactggcaagtgtgaaagcacagatt
ccagaaggagaaatcaaaaatgggagagatccagtgaccttgcagttgctgaagatgtgg
tatgagttagatgagaagaaacgaagtaagtacctgaagaaggcagccaggtgtcccgac
ccaagccttgggctctggcgtccggacactcactttgcatctgtgtcagagacctttgag
aagggagttgcagattatgtcagcaagtgggaatctgaaggcaaacgaagctgtgtgcac
ccagcacttccttcatacaggctgaaggacttgctgtatttgaagtggcagcgatctctt
tgtgacccaggagaagctgtggggcttcttgcagctcagagcattggggagccttccacc
cagatgactctgaacacctttcattttgctggcagaggtgaaatgaatgtcacactgggt
atcccaaggctgagggaaatactgctggtggctggtgccaacatcaaaacaccaaccatg
agtgttcctgtgttcaataccaagaaagctctcaagaaggtgaagcagctcaagaaacag
ctcacaagggtgtgcttagctgaggtcctgcagaaggtggagatcgaggagtcgctgcgc
atgcagtgcgagcaggaccggcatcgcctctgcaaggtccgcttccacttcctgccccac
cactgctaccgcgcggagaagagtgtgaagcccaggcagatcttgcacttcatggagaca
aggttctttaagttgcttctggatgcaattaaaaagaagagtgccaagatggaatctttt
actgcagtcagtgcttggagggcaactcacaaagatgtagacagtgaccaagacaagagc
cttcatgaagctccagcagaggaagaggagaacattgttgatgcagatcctgatgaaggg
gatggtgatgctacagaagccaaacggaggaagaagcaggaagaggaggttgattatgag
agtgaagaagagaaagaagaagaaaacatggatgagaatctggaaggtgaagaggctgag
tcggaagaagaagagcggcctcctggagccgaggatgagagcgcggcggctggcgcggcg
tggctcctgcccccggcgtctcaggccagaagggagagaggtcgctgggctcagtctgca
gagctgcgagtgaatgctgtgctggagagccacccctccatccagggctacagctttgac
actgagaatgacctgtggtgcgaggtctccctgagactgcccctgctgaaggtgtacttc
gacctgagctcgctgctggcctcgctggcgcggagcaccgtgattcacgaagtgaagggc
atcacacgctgcctgctgcaggagggcaccgcccggcacggagggaaggagctggtcctc
cacacagagggcatcaacctctccgagctcttcagatactctgatattttagacctcaac
agactgtactccaatgatatccatgccatggccaagaactatgggattgagactgccctg
agggtgatcataaaggaaattaaggatgtgtttgctgtgtatggcatcgcggtggacccg
cggcacctctcgctggtggccgattacatgtgcttcgagggctgctaccgccccctcagc
cgcctcggcatccagtccagcgcctcccccctgcagcagatgacctttgaaaccagctac
aagttcctgaaggaggcgacaatgatgggagcccatgatgaactgagatccccttctgct
tgcctggtggttggaaaggtggttaaaggaggcactggcttgtttgacctgaagcagccc
ctcaggtag
DBGET
integrated database retrieval system
