Dryobates pubescens (Downy woodpecker): 104305053
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Entry
104305053 CDS
T08526
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104305053 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpub03400
]
104305053 (MSH6)
DNA repair and recombination proteins [BR:
dpub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104305053 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PWWP
Motif
Other DBs
NCBI-GeneID:
104305053
NCBI-ProteinID:
XP_009904173
LinkDB
All DBs
Position
Unknown
AA seq
1261 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIMRGKGKSTRVHVQFFDDSPTRGWVSIRYLRPYKGSSDVEA
LRGGMFHSTKPEIKRAMVLADDAVSKDKTKRLELAVCNEPSDTEEEEEETEQMSESASAN
SDDCSSEEDVKSNKRVRNRENAIKTKRRRVVDSESDHDGSDAEFKPDVKEAASSEEASSG
ADENESSDAETDAESVAESPVKVPSKRKRKEIKKPAKRSSSENEQSEPPKRVAAVSVEAK
SKLTSFAAPESFESQANACSGGSSGFGVWEHEKLDWLQEGKKKDARRRRQSDPDYDPHTL
YVPEDYLNRCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVSELGLIFMKGTW
AHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMEARCKATAHPTRFDKVVRREICRI
ITKGTQTYSIMDCDPSENHHKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFHVGQFSDDRH
CSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLKVLL
EEGYFKEKETSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGACVFYLQKCLIDQ
ELLSLANFEEYLPVDVNAAKATSSCFAKTDQRMVLDGVTLMNLEVLQNGTNGTTEGTLLE
RIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLSVPDKMSEVGEHLKKLPDLER
LLNKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMQEIVDAMEEVAS
DFKSKVLKQLVTREGQNPDGRFPELSAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKA
LQDIDAVEEDLKRYLEKQRKLLGYKSVMYWGAGKNRYQMEIPESVVSRHLPEEYELKSSR
KGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDQNSKAWQTAVECIAVLDVL
MSLANYSQDGDGPLCRPVIVLPGDSAPPFLELKNSRHPCITKTFFGDDFIPNDIVIGSTD
EDGSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRLGAS
DRIMSGESTFFVELSETSCILQHATKHSLVLMDELGRGTATFDGTAIASAVLKELAERIK
CRTLFSTHYHSLVEDCSHTGAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGF
NAARLANIPEEVIQKGHRKAREFEKMTISLRVFRSLCLLVDGATTPAADAVQKLTALMEQ
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccatgtctcatttacaaccatccaactgaaagaacgata
atgagaggaaaagggaaatccactcgtgtccatgtacagttttttgatgacagccctaca
agaggctgggtcagcatcagatacctgagaccatataaaggttcatcagatgtggaggca
ctgaggggaggtatgtttcatagtacaaagcctgaaattaaaagagcaatggtgctagca
gatgatgcagtgagcaaagataaaactaagcgacttgaactggcagtatgcaatgaacct
tcagacacagaggaggaagaggaggaaacagagcagatgagtgaaagtgcatcagccaac
agtgatgactgcagtagtgaggaggatgttaagagtaacaagcgagtgaggaacagggaa
aatgccataaaaaccaaaagaagaagagtggtggattctgagagtgatcatgatggctct
gatgcagagttcaagcctgatgtgaaggaagcagcaagcagcgaggaagctagtagtggg
gcggatgaaaatgaatcttctgacgcggagacagatgcagagagcgtagcagaaagtcct
gtaaaggttccttctaaacgaaagaggaaagagataaagaagcctgctaaaaggagtagc
tcagaaaatgagcagtctgaaccccccaaaagagtggcagcagtttctgtagaagctaag
tccaagctgacatcctttgcagcacctgaaagttttgaatcccaagcgaacgcttgcagc
ggaggcagcagtggctttggagtgtgggaacatgaaaagctcgactggctgcaggaggga
aagaagaaagatgcgcgaaggagacggcagagtgaccctgattatgacccccataccctg
tacgtacctgaggactacctcaacaggtgcacaccaggaatgaggaggtggtggcagctg
aagagccaaaacttcgatgcggtgattttctacaaggtcgggaaattctacgagttgtac
cacatggatgcggtcaccggcgtcagcgagttggggctgatctttatgaaaggaacttgg
gcccattcaggttttccagagactgcatttggcaggttctccgatgtcttggtgcagaag
ggctacaaggtcgctcgtgttgagcagacagaaactccggaaatgatggaggcgcgctgc
aaggcaacggcccacccgaccagatttgacaaggttgtgcgccgagaaatatgcaggatc
atcaccaaaggaactcagacttacagcattatggactgtgatccctctgagaaccatcat
aaataccttctgtgtgttaaggaaaaggaagactcctctggacaacgtgtctacggggtc
tgctttgtcgacacatcagtagggaagtttcacgtgggccagttctcagacgaccggcac
tgttcaaggtttaggactttagtagcacattacactcctgtgcaggtgctgtatgagaag
gggaacctgtctgtggacacacagaagatactaaagggctcacttgtttcatgcattcag
gaaggtctgatctctggttcccagttctggaatgcgtctaaaacactaaaagtccttctt
gaagaaggatatttcaaggagaaagagacctctgaaaatggatgttctctgccctctgta
atcaaatctctgacttcagagagtgactcactgggattaactcctggtgaaaacagcgag
ttagctttgtcagcacttggagcctgtgttttctatctccaaaaatgcctgattgaccag
gagctgttgtcactggcgaactttgaggagtacctccctgtggatgttaatgctgcaaaa
gctacgagcagctgctttgccaaaaccgaccagcggatggtgctggatggagtcaccctg
atgaacttggaggttctgcagaacggaaccaatggaaccacagaaggtactttgctggaa
aggattgattcttgttgcacgccgtttgggaagcgactcctgaagcagtggctgtgtgct
ccgctgtgtaatccaaaatccatcaacgatcgtttagatgctgtcgaggaccttctgtca
gtgccagataaaatgtctgaagttggtgaacacctgaagaagcttcctgaccttgaaagg
ctgctcaacaaaatccacagcattgggtcaccactgaaaagccagaaccatcctgacagt
agggccatcttctacgaagagatcaaatacagcaaaaaaaaaattgctgactttttgtct
gcgctggagggctttaaagtaatgcaggaaattgttgatgccatggaagaagttgccagt
gacttcaaatctaaagtcctgaagcagctggtcacccgcgagggccaaaacccagatggc
cgcttcccagagttgagcgcagagctcaagaggtgggacactgcctttgaccacaaccag
gctcggaagaccggagtgatcactccaaaggcagggtttgaccctgattatgataaagca
ctacaggacattgatgctgttgaggaagatctcaagaggtacctggagaagcaacgcaaa
ctgctggggtacaaatccgtgatgtactggggggcggggaaaaaccggtaccagatggag
ataccagaaagcgtcgtctcgcgtcatttgccggaggagtacgagctgaagtcctccagg
aagggatacaaacgttactggaccaaggagatcgagaagatgctggctgcaatggtcaat
gctgaggagcgcagagatgcggctctgaaggactgcatgaggaggttgttctacaacttc
gatcaaaacagcaaagcctggcagacagctgtggagtgcattgctgtgctagatgtcttg
atgtctctggctaactacagccaggacggcgacggacccttatgtcgtcctgtgatcgtg
ctgcctggggatagtgctcctcccttcctggaactgaaaaattcacgtcacccatgcatc
acaaaaaccttctttggggatgatttcattcctaatgacattgtgataggcagcacagat
gaagatggcagtagtgaagcttcctgcgtgttagtgactggcccaaacatgggtggcaag
tctacgctcatgagacaggctggcctcctggttataatggctcagctgggatgctacgtg
cctgctgaagcctgcaggcttacgcccattgacagagtgttcaccaggctgggggcctca
gacaggatcatgtcaggtgaaagtaccttcttcgttgaattgagtgagacttcctgcatc
ctccagcatgcaacgaagcactccctggttcttatggatgaactgggcagaggcacagcc
acttttgatggaacagctatagccagtgcagtgctgaaagaactggcagagcggatcaag
tgtcggactctgttctccacacactaccactcactggtggaggactgctcacacactggg
gctgtgcggcttgggcacatggcatgtatggttgaaaatgagagtgaagatccaagccag
gaaacaattacattcctgtacaagttcattgaaggagcgtgtccgaagagctatggcttc
aatgcagcaagacttgctaatattccagaggaagtcattcagaaggggcacagaaaagca
agagagtttgaaaaaatgacaatttcactgagagtattcaggtctctgtgcctgctggtg
gatggtgcaacaaccccggctgcagatgctgtccagaaactcaccgcgctgatggagcag
ctttag
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