Dryobates pubescens (Downy woodpecker): 104305760
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Entry
104305760 CDS
T08526
Symbol
CDKAL1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpub03016
]
104305760 (CDKAL1)
Enzymes [BR:
dpub01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
104305760 (CDKAL1)
Transfer RNA biogenesis [BR:
dpub03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
104305760 (CDKAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM
Styelin
Motif
Other DBs
NCBI-GeneID:
104305760
NCBI-ProteinID:
XP_009904970
LinkDB
All DBs
Position
Unknown
AA seq
608 aa
AA seq
DB search
MPAACDSVLEDIEDIVSAEDLKPHDRQFVRQNVFPKVRKRNSQNAQTDDDPPSDSIIPGV
QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHFRNSI
KKAQEGKKKVVLAGCVPQAQPRQDYLKGLSIIGSLELLKIMWVGGCCHRPCIRKGALLWK
GEASDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLN
ACTYCKTKHARGDLASYPIEELVDRAKQSFQEGVCEIWLTSEDTGAYGKDIGTDLPTLLW
KLVEVIPEGAMMRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKRE
YCVADFKQVVDFLKEKVPGITIATDIICGFPGETDEDFQETMKLVEQYRFPSLFINQFYP
RPGTPAAKMHQVPAAVKKQRTKDLSQLFHSYSPYDHKVGERQRVLVTEESFDSNYYVAHN
PFYEQVLVPKDPLLMGKMVEVNIYEAGKHFMKGQLVSDARVYTASITKPLAKGEVSGLTE
EFRHAPQSGTNWKANPSAETLVKTPLSSWLTLQLPWQQEGDGLKILSVSLALLAVLVMFY
YGVMKTEL
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgcctgtgattctgtgcttgaagatattgaagatatcgtgtcagcagaagat
ttgaagccacacgatcgtcagtttgtaagacagaatgtcttccccaaggtgcggaaacgc
aactcacagaacgctcagacggatgatgaccccccaagcgacagcattattcctggtgtt
cagaagatctggattcgtacctggggatgttctcacaataattcagatggtgaatacatg
gctggacagctggctgcctatggatacaaaattacagacaactctgctgaagcagattta
tggttgctgaacagttgtacagtaaaaaatcccgccgaggaccacttcagaaactcaatc
aagaaagcccaagaagggaagaagaaagtggttctagcaggctgtgtgccacaagcccaa
cctcgtcaggactacctgaaaggcttgagtatcatagggtcattggaacttctaaaaatc
atgtgggttgggggttgttgccataggccgtgtataagaaaaggagctcttctctggaag
ggggaagcttcagaccgtgtagtagaagttgtggaggaaactattaaaggtcattctgtg
aggctgctgggtcagaaaaaggataatggaaaacgtttgggcggagcacgcctggatttg
ccaaagattaggaagaatccactgatagaaattatttccatcaatacagggtgtctcaat
gcatgtacctattgcaaaacaaagcatgccagaggagatctagcaagttatccaattgaa
gagctagtggacagagccaaacaatcttttcaagagggtgtttgtgagatatggctgacc
agtgaagacacaggggcttatggcaaagacattggcacagacctccctacgcttctgtgg
aagctggttgaagttattcctgagggagctatgatgaggcttggcatgacaaaccctccc
tatattttagagcatctggaggaaatggcaaagattctcaatcacccaagagtctatgct
tttctgcacataccagtccagtcagcttctgacagtgtgctcatggacatgaaaagagaa
tactgtgtggcagacttcaaacaagtagtggatttccttaaagaaaaagtgcctggaata
acaattgctacagacatcatctgtggttttccaggagagacagatgaagattttcaagaa
acaatgaaacttgtagaacagtacaggtttcccagcttgttcattaatcaattttaccca
cgcccagggaccccggctgcaaaaatgcatcaagttccagctgcagtgaaaaaacagaga
acaaaggacctgtcccagctgtttcattcatacagtccctatgatcataaggttggtgag
aggcagagagttctagtaacagaagaatccttcgattccaattactatgttgctcacaat
cctttctatgagcaggttcttgtgccaaaggatcctctgctaatgggtaagatggtagaa
gtgaatatttatgaagctgggaaacattttatgaaggggcaactagtgtcagatgccaga
gtttacactgcatccatcaccaagcctttggcaaaaggagaagtttctggtttaacagag
gagttcaggcacgcaccacagagtggcacaaactggaaagcaaacccttctgctgagacc
ttagtgaaaacaccactcagctcatggctgactttacagcttccatggcaacaagaaggg
gatggactgaagatactgtctgtcagcctggctctgcttgcagtgcttgttatgttttac
tacggagtaatgaaaacagagctgtga
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