Dryobates pubescens (Downy woodpecker): 104305810 Help Entry 104305810         CDS       T08526                                  Symbol SPG11 Name (RefSeq) spatacsin   KO K19026   spatacsin Organism dpub  Dryobates pubescens (Downy woodpecker) Brite KEGG Orthology (KO) [BR:dpub00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:dpub03400]     104305810 (SPG11) DNA repair and recombination proteins [BR:dpub03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      104305810 (SPG11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  104305810 NCBI-ProteinID:  XP_009905020 LinkDB All DBs Position Unknown AA seq 2045 aa AA seqDB search MLAFVPRVVSWAPSSPGQSDGMRQQWKQIPPGAPQEVGHLECKLVTGVKALFVVVTADRG LTLALWDFESGDVTYYHFSKTSVYVDCSAEVPTCLLLTEDGLCLVLFGLTQEEFLNRLMI YGSAGVVDALCHLNGWERCSIPMHALEAGLENRQLDTVDLFLKSKENLFSLSAACSGADQ PPASASQAYLQNLEELRPALNLLCSAIRENDLEPHSKQFSEQLLHLTLTFLTKQLEDIFV HTEEPDGFLQRGADILTDYIIKLRKFLRKYPRPHRSTVQAGRGELDEDLLLVEERQKWEK LTAEEVIAEAILSNRMPEAQIFFQTQQHPAQSLPEFIQRGLNLVYDCLLKDNTREACELL RNMGFDVQEELHKICFYTADKPIRDLLVKVLQEENYFSEKEKKMIEFVHQVESCYWGSFQ ENPEMQSLSSFRSWRKEQDFSRHADVLDSLLSGDRHGVPKRRVKIMLNWAQWWDELVQEM ILLPKRPRQDLKTCNPEVLWMHLTAQHDWPSICSWVEECDPSQPTCGQTPWPPLTPAIID QKMLCSSYMRNDILNKLARNGIFVSSELEDFELLLQRLSYLGGVLQNPHPVLKYSAAGAL DFHARFILHCLEHNLQYLLYTYLDYYSLTPSNCPLLENKELHEAHPWFEFLVQCRGVASN PRDPKMIFQASLANAQILIPSNQASVSSMLLEGRTLLALATTMYAPGGIDQVLQNEDMEK PLKKVDPQLLKMALTPYPKLKAALFPPSTSHGILPPDISLYHLVQSLAPFDPAKLFGWQS TNTLAVSDASSDFPHFSSPELVNKYAIMERLDFGYYLHHGRPAFAFGTFLVQQLVKSKSP KQLIQQAGNEACVLALSSFSVPAVGAACVCFLELLGLSSLKLRVDLKVANMIFSYRTQKE DSQHSPIRESLVEKLTKLADGEKAAAEEVLTSLEEAFWDAVEHQGIKKTSCDSRRQWALV MQFCKVHNISLSTSYLKECAKANDWLQFIIQTQLYSYQPDEVMSILQGFTPVLQDHLMLA LEKLPILSPDKGVLRSKYADSLFQILLQCQGNSNPSGYLLTEGLRQHAPILSVLAACFQD ANIIHCLCVWIITTVDDTSRAEATNHIQSSSETHSWDLHDLSVIWKVCLRKQKTKTLLNG FQLFLKDSPLLHILEMYELCMSCKKYNEAKSQLEKFQDSLSKLKAEEEPAASELPVQWLE SQALFLLELMMQQCRTEYELGKLLQLLAAADSLLLDGPYVRKLCALSETLKDSSIAINRS ILTSYSMDTFQRECRSILEQLQEKGLFSLAREVAALAELPMDNIVTREVLRDLHRLRDVG QWHQNQTRVEFWRKCHDSFMKNSISSQAASDFFFDQANTVFEALGQEKINSIMERHLLLT LTGHWLAKSDSVPLRRLEEIEKQIWICHITQQILSTDQGTGKTRFPSQAAVNRDLTFDSL AKEFSFSKLPALNTPKYLQLEGLAFREAQQTLTSEEEEALRFLIGSLLDEGSVHEASRVC HYFQFYSRDVSLVLHCRALASGEAELDKLHADIQALLAARERTPDSSSSQQGRVPSTSSL EDWTPVGAPPLDDQVVSSLKALTDECVHGRNYCRQVLCLYELSKELNCSYSEMSAHDPEK VLRAILSSRRPDRCRKAQAFISTQGLQPAAVAELVAEEIMQELLASSEGKGQKQVSNPAS ESQTFLQLAKLCQDHTLVGMKLLDKISSVPRGELSCITELLILAHNCFSLTCHMEGITRV LQAARLLTDQHLAPNEEYGLVVRLLTGIGRYNEMTYIFELLHEKHYFEVLMRKKLDPSGT LKTALLDYITRCRPGDSEKHNMIALCFSMCRQIGQNHQAAAAVQLKLIESRPWEESLQDI TNLKKLLMKALTLFIDAAESYSKDSCVRQSLRCRSLTKLITLQLHFLNSGQSTMLINLSQ QDLMDSILSLPRFYQAAIVAEAYEFVPDWAEVLYQQVITKGDFTYFEEFKQQRPLKPSIF EEIAKKVKQQPPSEAALKNLKRLLAHCEDIYTYYRLAYDNKFYDVVNTLLKDPQTGCCLN DMLAN NT seq 6138 nt NT seq  +upstreamnt  +downstreamnt atgttggcttttgttccccgggttgtctcatgggccccttccagcccgggccagagcgat gggatgaggcagcagtggaaacagatccccccaggagcaccacaggaagtggggcacctg gagtgtaaactggtcactggagtcaaagccctctttgtggtggtcacagctgacagggga ttgactcttgctctgtgggatttcgagtcaggagatgtgacctattaccacttcagcaaa accagtgtttatgtggattgcagtgcagaggtgccaacatgtctgcttctgacagaggat ggtctctgcttagtcctgtttggtttaactcaggaagagtttctgaacaggctgatgatc tacggcagcgctggagtggtcgatgccctttgtcatctcaacgggtgggagcggtgctca attccaatgcatgcactggaggcaggtttggagaaccgtcagctggacacagtagatcta tttctgaagagcaaagaaaatctcttcagtctgtctgcagcctgctctggagctgaccag cctcctgccagtgcatcccaggcttacctgcaaaatttggaagagctgaggccagctctg aatctgctttgctcagcaatcagagaaaatgatctggagcctcacagcaaacaattctct gagcagctgctgcacctcaccttgactttccttaccaagcagctggaagacatttttgtg cacacagaagaacctgatggattcctgcagagaggggcagatattttaactgattacatc attaagctgaggaagttcctgaggaaataccctcgcccccacaggagcacagtgcaggca ggacgaggggagctggatgaggacctgcttttggtagaggaaagacagaagtgggaaaag ctgacagcagaggaagtcattgccgaggccatcttaagcaacagaatgccagaggcccag atcttcttccaaacacagcagcatcctgctcaaagccttccagagtttattcagagaggg ttgaacttggtctatgactgtcttctgaaggacaacaccagagaggcctgtgagctgtta aggaatatgggctttgatgtgcaggaggaattgcataagatctgtttctacacagctgac aaacccattcgagacctgttggtgaaagtcttgcaagaagagaattacttttctgagaaa gagaagaaaatgatagagtttgtgcatcaggttgaaagctgttactgggggtccttccaa gagaacccagagatgcaatctctctccagtttcaggagctggaggaaggagcaagacttt tccaggcatgcagatgttctggactcactgctgagtggtgacaggcacggggttcccaag aggagagtcaaaatcatgttgaactgggctcagtggtgggatgagctggtgcaggaaatg attcttctccccaagaggccacgtcaagacctcaagacctgcaatcctgaagttctctgg atgcacttgacagcccagcatgattggcctagtatttgctcatgggttgaagaatgtgat cccagccagcccacgtgtggacagactccctggcctcctctgactccagccattattgac cagaagatgctgtgcagtagctacatgagaaatgatattttaaacaagctggccagaaat ggcatttttgtctcttctgagctggaggattttgaacttctgctccaaagactgtcttac ctcgggggagtgctgcaaaaccctcaccctgtgctgaaatacagtgctgcaggtgccttg gacttccatgctcgcttcatcctccactgtttggagcataatttgcagtatctgttgtac acctacttggactattacagcttgactccttcaaattgccctcttttggagaataaggaa ctgcatgaagctcatccctggtttgaattcctcgtgcagtgtcgaggggttgccagtaac ccccgagatccaaagatgattttccaggccagtctagcaaatgctcagatcctgatcccc agcaaccaagccagcgtgagcagcatgctgctggagggacggactctgctagccctggct actacaatgtatgctcctggaggcattgatcaggttcttcagaatgaagatatggaaaaa cctctaaagaaagtggatccccagctcttaaaaatggccttgactccttaccccaagcta aaagctgctctctttcccccctctacttcccatggaattctgccacctgacatctctctt taccatcttgttcagtcattggcaccctttgatcctgctaaattatttggctggcaatcc acaaatactcttgctgtatcagatgcatccagtgacttccctcatttttcctcccctgag ctggtgaacaaatacgccatcatggagcgactggattttgggtactacctgcaccacggg cgcccagcctttgcttttggcacattcttggtccagcagttggtaaagagcaaatccccc aaacagctgattcagcaagcagggaatgaagcctgtgttttagctctctcctccttcagt gtacctgcagtaggagcagcctgtgtgtgcttcctggagttgctgggtctcagcagcctc aagctcagggtggatcttaaagttgccaacatgattttcagctacaggactcaaaaggaa gactctcagcacagtccaatacgagaatctttggttgagaagttaacaaaactggctgat ggtgaaaaagcagcagcagaagaagttcttacctccttagaagaagccttttgggatgca gttgagcaccaaggaataaagaagacctcttgtgactctagaaggcagtgggcattggta atgcagttctgtaaagtccataacatcagcctgagtacctcctacctaaaggagtgtgcc aaagccaacgactggctgcagttcatcatccaaacccagctgtacagctaccagccagat gaggtcatgtccatccttcaaggttttactcctgttttacaagaccacttgatgttggca ttggagaagttaccaattttgagccctgacaaaggggtgttgaggagcaaatatgcagat agcctctttcagatcctccttcagtgccaggggaactccaacccttcaggttatcttctg actgaaggcctgaggcagcatgctcccattctgagtgttttagcagcctgcttccaggat gcaaacatcattcattgcctctgtgtttggataattactactgtggatgatactagcaga gctgaagccacaaaccatatccaaagctcatcagaaacccacagctgggatcttcatgac ctctcagttatctggaaagtctgtttaagaaagcaaaaaaccaaaacactcctcaatggc ttccaactctttttaaaggattcccctttactgcatatcctggagatgtatgagctgtgc atgagctgtaagaaatacaatgaagctaaaagccaactggagaagtttcaggacagtctc agcaaactcaaagctgaagaggaaccagcagcttcagaattgcctgtgcagtggttggaa tcccaggcactgtttcttcttgagttgatgatgcagcaatgtagaacagagtatgaactg ggaaagctcttacagctcttggctgcagcagacagtctcctgcttgatggtccttatgtg aggaagctctgtgcactgagtgagaccctgaaggactcctccattgccatcaatcgctcc atcctaaccagttacagcatggacaccttccagagggagtgcaggtccattctggagcag ctgcaagagaaagggctgttctctctggctcgggaggtagcagctctggctgagctgccc atggacaacatagtgacacgagaggttctaagagacctgcaccgactgagagacgttggc cagtggcaccaaaaccagacaagagttgagttctggaggaaatgccatgacagcttcatg aagaattccatctccagccaagctgcatctgatttcttttttgatcaggcaaacacagtg tttgaagccttaggtcaggagaagataaacagcattatggagagacatctcttgctcacc ctcactggccactggctggccaagagtgactcggtgccactgcgcaggttagaggagatt gagaagcagatctggatctgtcacatcacacaacaaatcctctccacagatcaggggaca ggcaagaccagatttccctcccaggctgcagtgaacagagatcttacctttgacagctta gccaaggagttttccttctccaagctccctgctctgaacacgccgaagtacttgcagctg gagggtcttgcattcagagaggctcaacagaccttgactagtgaggaggaggaagccctc aggttcctgattgggtctcttctggatgaaggaagcgtgcatgaagccagccgtgtgtgc cactacttccagttctacagcagagatgtttcactggtgctgcactgcagagctctggcc tcaggggaggctgagctggacaaactccacgcagatatccaggctctgctggcagccagg gagaggacacctgacagcagttcatctcagcagggcagagtccccagcacatccagctta gaagactggacacccgttggggctccacctctggatgatcaagttgtttccagcctgaag gctctcacagatgaatgtgtccatggcagaaactactgcaggcaggttctctgtctgtat gagctttccaaggagctgaactgctcctacagtgaaatgtcagcccatgaccccgagaag gtgcttcgggccatcctgtcctcccgtcggccagacaggtgcaggaaggctcaggccttc atcagcacacaggggctgcagcctgcagctgtggcagagctggtggctgaagagatcatg caggagctgttggcatcttcagaagggaaaggacagaaacaggtttcaaaccctgcatct gagagccagacattcctgcagctggctaagctctgccaggatcacacactggttggcatg aagttactggataaaatttcctcagtgccacgtggggaactgtcctgcattacagagctg ctgatcctggcccataactgctttagtctgacgtgccacatggaaggcatcacgcgagtg ctccaggcggcgcggctgctcacggatcagcacctggcccctaacgaggagtatggactg gtggttcggcttctcacggggattggcagatacaacgagatgacctacatattcgagctg ctgcatgagaagcactactttgaggtgctcatgaggaagaagttagacccgagcgggacc ctgaagacagccctgctggactacatcacgcggtgccggcccggggacagcgagaagcac aacatgatcgccctctgcttcagcatgtgccgccagatcggccagaaccaccaggccgcc gccgccgtccagctcaagctcatcgagtcccggccctgggaggagtctcttcaggacatc acaaacctgaagaagctgctgatgaaagctctgactctcttcattgacgcagcagaaagt tattctaaggactcctgtgtccggcagtcgctgcgctgcaggagcctgacaaagctgatc accctccagctgcatttcctcaactctggccagagcaccatgctgatcaacctgagccaa caggacctgatggactccatcctctccttgcctagattctaccaggcagccatcgtggct gaagcctatgagtttgttccagactgggctgaagttctctatcagcaagtgatcaccaag ggagacttcacttactttgaagaattcaaacaacaaagaccactgaagccaagcattttt gaggagattgccaagaaagtcaagcagcagcccccttctgaggctgctctgaagaacctc aagcgcctgctggctcactgtgaggacatctacacctactacaggctggcctacgacaac aagttctacgacgtggtcaacacgctgctgaaggacccccagactggctgctgcctcaat gacatgttggcaaactag

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