Dryobates pubescens (Downy woodpecker): 104306166
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Entry
104306166 CDS
T08526
Name
(RefSeq) nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dpub03009
]
104306166
03036 Chromosome and associated proteins [BR:
dpub03036
]
104306166
Enzymes [BR:
dpub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104306166
Ribosome biogenesis [BR:
dpub03009
]
Eukaryotic type
Pre-60S particles
Helicases
104306166
Chromosome and associated proteins [BR:
dpub03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104306166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
LRIF1
Motif
Other DBs
NCBI-GeneID:
104306166
NCBI-ProteinID:
XP_009905419
LinkDB
All DBs
Position
Unknown
AA seq
714 aa
AA seq
DB search
MPEATRFSASSEAESDSECPMETESAQESSRRRRKKEKKEKKSKRHEKSRKRKAETEESE
QSEDEADSPKLKKSRSKIKQNGDTREESPENTRLSSLSVKSSHKKRHSNSSETSSGEGDS
EQEQEMTEEQKEGAFSNFPISKGTVQLLQARGVMYLFPVQVKTFDPVYSGKDVIAQARTG
TGKTFSFAIPLTEKLQGDSQERRRGRSPKVLVLCPTRELANQVAKDFKDITRKLTVACFY
GGTPYNGQIDLMRNGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQV
EDILRVAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKRTQKAATTVEH
LAIECHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKEANELALNASIKQDCQSLHGDIPQ
KQREITLKGFRNGSFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGR
TGICICFYQRKEEYQLRYVEQKAGITFKRVGVPTATDIIKASSKDAIRCLDSVPQTAIEY
FKESARFLIQEKGPVNALAAALAHISGATSIEQRSLLFFFNSDAGFVTMILRCSEEINNM
SYAWRRLRELLGDDVDRKVNRMCFLKGKMGVCFDIPAADQKDIEARWEDSKQWRLCVATE
LPELVESQRPGGGGGGGGNSRSFSSSRNGRRGGSGRNRFRSRGQKRSFDRAFDR
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagccacccgatttagcgccagcagcgaggccgaatcggattccgagtgccct
atggagaccgagtcagctcaggagagtagtcgccggcggcgcaagaaggagaaaaaagag
aagaaatctaaacgtcatgagaaatctcggaagagaaaggctgagacggaggaaagtgag
cagtcggaggatgaggctgattccccaaaacttaagaaatcaaggagtaaaattaaacaa
aacggtgatacgagagaagaaagcccggagaacacgagattatcttccttaagcgttaaa
tcctcccacaaaaaacgacacagtaattctagtgagacgtcaagtggtgagggagacagc
gagcaagagcaggagatgactgaagaacagaaggagggtgcattctccaacttcccaatt
tccaaaggaactgttcagcttcttcaagctcgaggagtgatgtatctgtttcccgtgcaa
gtgaagacctttgacccagtgtattctggcaaagatgtaattgctcaggcacgaactgga
acagggaaaaccttctcttttgccattcctttaactgaaaagcttcagggagactcacag
gaaagaagaagaggccgttcaccaaaggtactagttctttgtccaacaagggagctggca
aaccaggttgccaaagattttaaagacatcacaagaaagctaacagtagcctgtttttat
ggaggaactccatacaatggacaaatcgatctcatgagaaatggcattgacattttggtt
gggacacctggtcgaatcaaagaccatcttcagaatggcaagctggaccttaccaaggtg
aaacatgttgttcttgatgaagttgatcagatgctggacatgggatttgctgagcaagtg
gaagacattttacgtgtggcatacaaaaaggattcagaagacaatccccagacactactg
ttttctgcaacttgcccacattgggtgtatgatgtggctaagaaatacatgaagtctaaa
tatgaacagattgaccttattgggaaaagaactcagaaggctgctacaacagtagaacat
ttggcaatagagtgtcactggtctcagagagctgcggttattggagatgtcattcaggtc
tacagtggcagccatgggaggaccattgttttttgtgagaccaaaaaggaggcaaatgaa
ctggctctgaatgcttcaatcaaacaggactgccagtcattgcatggtgacattcctcag
aaacaaagagagatcacactgaaaggttttagaaacggttcatttaaagttctagttgca
acaaatgttgctgcccgtggtttagatattcctgaagttgacctcgtcgtacaaagttca
ccaccaaaggatgtggagtcctatatccaccgctctggacgcacaggtagagctggacgg
actgggatctgtatctgcttttatcagcgaaaagaagaatatcaattaagatatgtggaa
caaaaagcgggcattacattcaagcgtgttggtgttcctactgcaacagatataataaag
gcttccagcaaagatgccatcagatgtctggattctgttcctcaaactgctattgagtat
tttaaggaatctgctcggttcttaatacaagaaaagggaccagttaacgctctggcagca
gccctagcccatatttcaggcgctacttccattgaacagcgttccctgcttttttttttt
aactcggacgcgggatttgttaccatgatactacgctgctcagaagaaataaataacatg
agctatgcttggcgaagactgcgagaactgctgggtgatgatgttgatcggaaggtgaac
agaatgtgtttcctcaagggaaaaatgggtgtgtgctttgatatacctgcagcagaccaa
aaggacatagaggcgagatgggaagactccaaacagtggcgtttgtgcgtggcgacggaa
ttacctgagttagtggaatcacagcgaccgggaggaggaggtggcggcggaggaaacagt
cgaagcttctcaagctccaggaacgggcggcgtggtggctctggtagaaacagattcaga
agcagaggccagaaacgaagttttgacagagcatttgatcgttaa
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