Dryobates pubescens (Downy woodpecker): 104306235
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Entry
104306235 CDS
T08526
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104306235 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dpub03000
]
104306235 (ARID1B)
03021 Transcription machinery [BR:
dpub03021
]
104306235 (ARID1B)
03036 Chromosome and associated proteins [BR:
dpub03036
]
104306235 (ARID1B)
Transcription factors [BR:
dpub03000
]
Eukaryotic type
Helix-turn-helix
ARID
104306235 (ARID1B)
Transcription machinery [BR:
dpub03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104306235 (ARID1B)
Chromosome and associated proteins [BR:
dpub03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104306235 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
104306235
NCBI-ProteinID:
XP_009905491
LinkDB
All DBs
Position
Unknown
AA seq
1822 aa
AA seq
DB search
MDPMVMKRPQLYGMGSNPHSQTQQSSPYPGQSYGPPGPQRYPVGMQGRAPTAMGGMQYPQ
QQIPPQYGQQGVSGYCQQGQQPYYNQQPQPQHLPPQAQYLSQAQQRYQAQQDMSQEGYGS
RSQPPMATGKPNHEDLNLIQQERPSSLPVEVLASEDATFGHKDLSGSIDDLPTGTEATLS
SAVSASGSTSSQGEQSNPAQSPFSPHASPHLSGIPGGPSPSPVGSPVGSNQSRSGPISPA
SIPGSQMPPQPPGSQSESSSHPALSQSPMPQDRGFMSGIQRNPQMSQYGPQQTGPSMSPH
PSPGGQVHPGIGSFQQSNSSGTYGPQMSQYGPQGNYSRPPTYSGVPNTSYSGPGPGMGIN
ANSQMHGQGPSQPCGTMPLGRMPSAGMQSRPFPGNMSSMTPNSPGMSQQGGPGMGPPMPT
VNRKAQEAAAAVMQAAANSAQSRQGNFPAMNQSSIMGSSSPYTQPMNNSSGLMNPQAPPY
SMAPNMVNSSTAPMGLADMMTAGESKLPLPLKADGKEEGPPQTESKSKDSYSSQGISQPP
TPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELG
NEPERKMWVDRYLTFMEERGTPVASLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRE
LATTLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKIQPPSPA
NSGSLQGPQTPQSTGSNSMTEVPGDLKPPTPASTPHGQMTPMQGGRNSAVSVHDPFSDVS
DSAFPKRNSMTPNAPYQQGINMPDMMGRMPYEPNKDPFGGMRKVPGSNEPFMTPGQMPNS
GIQDMYNQTPSGAMSNMSMSQRQQFSYGSGYDRRLDHGLGPEGSMGPAGQSNMVPSNSDP
SIYSPNHYPGQQRHEPYGQQYPGQGPPSGQPPYGGHQPGMYPQQQNYKRHMDGMYGPPAK
RHEGDMYNMQYGNQQQEMYNQYSNAYAGPDRRPMQGQYPYPYNRERMQGPGQMQQHGIPP
QMIGGPMQSSSSSEGPQQNMWPTRNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQ
RINHESQWPSHVNQRQPSYMSSSASMQPITRPPQSSYQTPPSMPNHISRAPSPASFQRSL
ENRMSPSKSPFLPSMKMQKVIPTVPVSQVTGPPPQPPPIRREITFPPGSVEASQPVLKPR
RKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELL
VEYFRKCLIDIFGILMEYEVGDPGHKALDHKAAKKDDGQSLAEATGKEENDECIDYFDED
EEEGEDEKVEGEEKSIVFSTPGAIADPSERPKQASKFDKLPIKIVKKNNLFVVDRSDKLG
RVQEFDSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRKAPPPLNSPSKKKDLEGKGESEE
QQEKSITATIDDVLSAWPGALPEDSNSGSQTESSKFPFGIHQAKSHRNIKLLEDEPRSRD
ETPLCTITHWQDSLAKRCICVSNIVRSLSFVPGNDTEMSKHPGLVLILGKLILLHHEHPE
RKRAPQTYEKEEEEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLP
ILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSR
QEKLYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGV
TMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISI
SAVLNSLVASVICDVLFQIGQL
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atggatcccatggtcatgaagagacctcagctgtacggcatgggcagtaaccctcattct
cagacgcagcagagcagcccctaccctgggcagtcctatggccctcctggcccccagcgc
tatcccgtgggaatgcagggccgagccccaacagccatgggaggaatgcagtatccacag
caacagatcccacctcagtatggtcagcaaggtgtaagtggctactgccagcagggccag
cagccgtactacaaccagcagccacagcctcagcatctgccaccccaggcacaatatctg
tcgcaggcccagcagaggtaccaggctcagcaggacatgtctcaggaaggctatggaagc
agatctcagccccctatggccacaggaaagcctaaccatgaagacttgaacctaatccag
caagaaagaccatcgagcttaccagttgaagtcttggcctccgaggatgctacatttgga
cacaaggatttatctggatccattgatgacttgccgactggaaccgaagcaaccctgagc
tcagctgttagtgcttcaggctctacgagcagccaaggggagcagagcaaccctgcacag
tctcctttctcccctcatgcttctccacatctctctggcatccctgggggcccatcacct
tcccccgtaggctctcccgttggaagcaaccagtcaagatccggccccatttctccagcg
agtattccaggcagtcagatgccaccgcagcctcctggcagccagtcagaatccagctcc
caccctgccttgagccagtcaccaatgccacaggaccgaggttttatgtcaggcatacag
aggaatcctcaaatgtcgcagtatggacctcagcaaactggaccttccatgtcaccacac
ccctcacctggaggccaggtgcatcctggaattggtagctttcaacagagtaattcaagt
ggtacttacgggcctcagatgagccagtatggaccgcaaggaaactactccagaccaccg
acgtacagcggtgtgcccaacacaagttacagtggcccgggacctggcatgggtataaat
gcaaacagccagatgcatggacagggcccaagccagccttgcggtaccatgcccttggga
cggatgccatcagctgggatgcagagcagaccatttcctggaaacatgagcagtatgacc
cccaattctcctggcatgtctcagcagggaggccctgggatgggcccacctatgccaact
gtgaaccgtaaggcacaggaggcagctgctgcagtgatgcaggctgctgcaaactccgct
cagagcaggcaaggcaattttcctgccatgaatcagagcagtatcatgggatccagctcc
ccctacactcagccgatgaacaacagctctggcttgatgaacccacaggctcctccttac
agcatggcacctaacatggtgaacagttcaacagcacctatgggtcttgcagatatgatg
acagctggtgagtccaaactaccccttcctctcaaagcagatggcaaagaagaaggaccc
ccccaaactgagagcaagtcaaaggatagctacagctctcagggtatttctcagccccca
accccaggcaacctgccagtcccttccccaatgtccccaagctctgctagcatctcctca
tttcatggagatgaaagtgatagcattagcagcccaggctggccaaagactccatcaagc
cctaaatcgagttcttctaccacaactggagagaagatcactaaagtctatgagctagga
aatgaaccggagcgcaagatgtgggtagatcggtacctcaccttcatggaggagaggggc
acgcctgtggccagtctgccagctgtgggcaagaagcccctcgacctgttcaggctctat
gtctgtgtcaaagagattggaggtttagcacaggttaataaaaacaagaagtggcgtgag
ctggcaaccaccttgaatgtcggcacttcgagcagtgcagccagctccctgaaaaaacaa
tacattcagtacctgtttgccttcgagtgcaagattgagcgaggggaggagccccctcca
gaagtcttcagcactggagatactaagaaacaacctaagattcagccgccatctcctgct
aattctggttccttgcaaggtccacagacaccacaatctactggtagtaattccatgaca
gaagtgccaggcgacctaaagcctccaacaccagcatcaacacctcatggacagatgaca
cctatgcagggtggcaggaacagcgccgttagtgtgcatgatcccttttctgatgtaagt
gattcagcgttcccaaagcgaaactccatgacgccaaatgcaccataccagcagggaata
aacatgccagatatgatgggaaggatgccatatgagcccaacaaagatccttttggtgga
atgagaaaagttcctggaagcaatgagcctttcatgacccctggacaaatgcctaacagt
ggaatacaagatatgtataaccagactccatctggagcaatgtccaacatgagtatgagc
cagcgacagcagttctcttatggaagtggctatgacaggaggttggatcatgggctgggt
cctgaaggcagtatgggaccagctggtcaaagcaacatggtgccttcaaacagtgaccca
agcatttactctcctaatcattaccctggccagcaaaggcatgaaccatatgggcagcag
tatccaggacaaggacctccctcaggacagccaccatatggaggacatcaacctggaatg
tatccacagcagcagaactataagcgacacatggatggcatgtatgggcctccagccaaa
cgccatgaaggggatatgtataacatgcagtacggcaaccagcaacaggaaatgtataac
cagtacagcaatgcttacgcagggcctgacaggaggcctatgcaggggcagtatccttat
ccatataacagggagaggatgcagggcccaggacaaatgcaacagcatggaatacctccc
cagatgattggtggccccatgcagtcatcatcctccagcgaaggtcctcagcagaacatg
tggccaacacgaaatgatatgccttacccttaccagaacaggcaaggtccaggaggccct
gcacaggccccgccatatccagggatgaatcgcactgatgatatgatggtacctgaccag
aggataaaccacgagagtcagtggccttctcatgtcaaccaacgtcagccttcgtatatg
tcatcctcagcctccatgcagcctatcactagacctcctcagtcatcctaccagacgcca
ccctctatgccaaaccacatctccagagctccaagtccagcatccttccagcgctctttg
gaaaaccgcatgtctccaagcaagtctcctttcctaccctccatgaagatgcaaaaggtt
atacccacagttccagtgtcacaggtcacaggacctccaccccaacccccaccaattagg
cgggaaattaccttccccccaggctctgtagaagcatcccaaccagtcttgaaaccaaga
cgaaagattacctcaaaagatattgtaactcctgaggcctggagagtgatgatgtctctt
aaatctggtcttttggctgaaagtacctgggcgctagacactattaatattcttctgtat
gatgacagcactgttgctactttcaacctctctcagttgtctggatttcttgagctttta
gtagaatattttagaaaatgcctgattgacatttttggaatcctaatggaatatgaagtg
ggagatccaggccacaaagcacttgatcacaaagcagccaagaaagatgacggccagtcc
ttggcagaagctactggaaaagaggagaacgacgaatgtattgactattttgatgaagat
gaggaggaaggggaagatgaaaaggtagaaggagaagaaaagagcattgttttttccact
cctggtgccattgctgatccaagtgagaggccaaaacaagccagtaaatttgacaagctg
ccaataaagattgtaaagaaaaataatctatttgttgttgaccgatctgacaaacttgga
cgcgttcaggaatttgatagtggacttctccactggcagcttggtggtggtgacacaact
gagcatatccagactcactttgaaagcaagatggaaattcctccacgcaggaaagcccct
cctcccttgaactcgccaagcaaaaagaaggaccttgagggaaaaggtgaatctgaggaa
caacaagaaaaaagtataacagcaaccattgatgatgtcctctcagcttggccaggagca
ttgcctgaagactcaaactctggttcccaaacagagagcagtaaatttccctttgggatc
catcaagccaaaagccaccgaaatattaaactgctagaggatgagccaaggagccgggat
gagactcctctatgcaccataactcactggcaagactccttggccaaacgctgcatctgt
gtgtcaaatatcgtccgtagtttgtcttttgtgcctggcaacgacactgaaatgtccaaa
catccaggcttggtgctgatcctgggaaagttgatcctacttcaccatgagcatccagaa
agaaagcgagcgccgcaaacttacgagaaagaggaggaggaggacaaaggggtagcctgc
agcaaggatgagtggtggtgggactgcctcgaggtcttgagggataacacattggtcaca
ttagccaacatttctgggcagctagacttgtctgcttacacagaaagcatctgtttgcca
attttggatggcttgctgcactggatggtgtgcccgtctgcggaggcacaggatcctttt
ccaacggtggggcccaactcggttctttcgcctcagagacttgtgctggagaccctgtgt
aagctcagtatccaggacaataatgtggaccttatcttggccactcccccattcagtcgt
caggagaaactctacgctactttagttaggtacgttggggaccgcaagaacccggtctgc
cgagaaatgtccatggcgctcttatcgaacctcgcccagggggacacactagcggcaagg
gcaatagctgtgcagaagggaagcatcggaaacttgataagcttcctggaggatggggtc
actatggcccagtaccagcagagccagcataacctcatgcacatgcagcctccacctctg
gagccacctagcgtagacatgatgtgcagggcagccaaggccttgctggccatggctaga
gtggatgagaaccgctcagagttccttttgcacgagggtcgtttgctggatatctcaata
tctgctgtcctgaactctctggttgcatctgtcatctgtgatgtactttttcagattggg
cagttatga
DBGET
integrated database retrieval system
