Dryobates pubescens (Downy woodpecker): 104306240
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Entry
104306240 CDS
T08526
Symbol
SCAF8
Name
(RefSeq) LOW QUALITY PROTEIN: protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpub03021
]
104306240 (SCAF8)
03041 Spliceosome [BR:
dpub03041
]
104306240 (SCAF8)
Transcription machinery [BR:
dpub03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104306240 (SCAF8)
Spliceosome [BR:
dpub03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104306240 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104306240
NCBI-ProteinID:
XP_009905497
LinkDB
All DBs
Position
Unknown
AA seq
1340 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTP
VLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQ
QLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLM
DRFDFGEESEQSEEPKKETPTSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQP
PQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVETNVDDSMDIQQQDMDIDEGQDVAEE
EIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSR
SYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIE
SINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDV
DLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEWETARSSEAAKENTQTTQSAAVDKST
VITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSAIPPPPFLRASFNP
SQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQPPLPIAQETMKDVPFTSLVLPVGT
VTSNLATPTLSAGSVFNPLPVNKPEPDEKGSHLADLQISSSENNRSVQSDVSSSSGLGGV
QPPSVSSSSGLTGEGQPPSVSSSSGLAAGVPPPSVSSSSGLVGGVQPPIVSSSSGLAGGV
QLPTVSSSSSLGGGVQPNSVSNSSGLMAGVQQPNVPNSSGLLAGVHPPSVSSSPGLLTGM
QPPSVSSSSGVLAGVQPPIVSSNSGLLLMPPPNVSSSSGLMGVPPPNISSSSGLMAMQHP
AGVQNMPHLNISSPRMPGMPLIDIRPGLMPHSPGPRFPLMQPGIPPQRSIPPPAILDPSL
HPPPRGPFPPGDIFNQTERPFGTPGRQNIDSISNPEKRLSLGGDNIQQGGXXXXXXXEGD
RDYRFAPVENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPADGREHFTRPHVDMRENFG
RPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPVYGGPKGFHEDRERFRHVNYRFES
RSGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREINGNRFGRDRMSNNWIPPP
HPRVFEYFDGATSQRKADSMPQVNGENTETESQPPTAQVQDDPELYEKLTSSVEINKEKS
DTEADIESEPVVESTETEGT
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgacacagattaccaaggcagcaatcaaggctataaagttctacaagcatgttgtacag
agtgttgagaaattcattcagaagtgcaaaccagaatacaaggttcctggtctgtatgtc
attgactccattgtgagacaatcccggcatcagtttgggcaagaaaaggatgtatttgct
ccaagattcagcaataacatcatcagcactttccaaaacttgtaccgttgtcctggagat
gacaagagtaaaattgttagagtgctgaatttatggcagaagaataacgtattcaagagt
gaaattattcagcccctcttggatatggcagcaggaattcctcctccagttgtgacacct
gtcttgcccagcactacagctgctatgagcaacaatacaccaggaacacctgtgacacca
gttactccagccaatgtggtacagagtttgccagatccttgggtatctcagattgctaat
acagatacccttgctgctgttgcacagattttacagagtcctcaaggccagcagcttcag
cagttgatacagacactgcagatacagcagcagaaacctcagccttccctgcttcaggcg
ctggatgctggtcttgtcgttcagttgcaggctctcacagcacaacttacggctgcagct
gctgctgctaacacacttaatccactggaacagagtgtctcttttaataagaagctgatg
gacaggttcgactttggggaagaatctgaacaaagtgaagagcctaaaaaggaaactccc
acttctcaactgcctttagtaccagaatctgtgaacaactcactttttcaccaactagcc
gaacagctacagcaacaaaatttagaacatctcaggcaacagcttctggagcaacagcca
cctcaaaaagcaagccctgaagagaaccaagaaggaaattttggttcagaacactccgcc
tcaccatcacaagggagtagtcagcagcagtttttagaagtagaaaccaatgtagatgat
tcaatggatattcaacaacaggacatggatatagatgaaggacaggatgttgctgaagaa
gagatttttgagcaagaagaaaaaaaatcagctgttcgctcaagatcaagaactcgttca
agatctcgttcaaggtcaccaagaaagcgaaggtctagatcacggtctggttctcgtaag
cgtaagcacaggaaacgatcacggtcaagatcaagagaaaggaagagaaagtcatctcgg
tcatattccagtgaaagaagggctagggaaagggaaaaagagcgtcagaagaagggattg
cctcctatacggtcaaaaacactaagtgtttgcagcactactctttgggtaggtcaagtt
gacaagaaggcaacgcagcaagatttaactaacttgtttgaagaatttggacaaatagag
tcaattaatatgattcctccaaggggttgtgcttacgtctgtatggttcatagacaagat
gcatatcgtgctcttcagaaacttagctctgggtcctataaaattggatctaaaatcatt
aagattgcctgggctttgaataaaggtgtgaaaactgaatacaaacagttctgggatgta
gatctgggagtttcatatattccatgggagaaagtaaaattggatgatttggagggcttt
gctgaaggtggcatgattgaccaggaaacagtaaatacagaatgggaaacagccaggagc
tcagaagctgctaaggaaaatactcaaactactcagagtgctgcagttgataagagcaca
gttattacaacgcagacagaagcttacacacagccagtcactatgctgcagattccagta
gctccagctgtgcctgctgttagcttggttccacctgcatttcctgtcacaatgtctgtc
cctcctcctggttatagtgcaattcctcctcctcccttcttgagagcaagtttcaaccct
tcacagccccctccaggttatatgcctcccccagttccacctgtggttccaccacctgtg
gtcccaccacctgtggtcccaccagttgttccaacacctttagtacaacctccattacca
attgcacaagagacgatgaaggatgttccttttactagccttgttctaccagttggcaca
gttactagtaatctggctactccaacgttgtctgctggaagcgttttcaatcctttgcct
gtcaacaaaccagaaccagatgaaaagggttcacatcttgcagacctgcagatttcttcc
agtgaaaacaacagatctgtgcaaagtgatgtctcaagtagctctggacttggaggagtg
cagccacccagcgtctcaagcagttctggtcttactggagaaggtcagccacccagtgtc
tcaagcagctctggacttgcagcaggagtaccaccacccagtgtttcaagcagctctgga
ctggtaggaggagtgcaaccacccatcgtttcaagcagttctgggcttgcaggaggggtg
cagctacctactgtctccagtagctcttctcttggtggtggagttcagccaaacagcgtc
tcaaatagctctggacttatggctggagtgcagcaacccaatgtcccaaatagctcaggg
cttctagctggagtgcatccacccagtgtctcaagcagccctggccttctgacaggaatg
cagccacccagtgtctcaagcagctcaggagttctagcaggagtacagccaccaattgtc
tcaagcaattctgggcttctgttaatgccaccaccaaatgtttcaagtagttctggactc
atgggagtgccaccaccaaatatttcaagtagttctggacttatggcaatgcagcatcca
gctggggttcaaaacatgcctcatttaaatattagtagtccaaggatgccgggaatgcct
ctcatagatatccgtccaggcctgatgccccactcacctggaccaaggtttccattgatg
cagccaggaatcccaccacagcgtagtattcctcctcctgcaatccttgatccatctctt
cacccaccacctcgaggtccttttcctccaggagatatttttaatcaaacagaaagacct
tttggaacacctggaagacaaaatattgatagcatttctaatccagagaaaaggctgtca
cttggaggtgataacattcagcagggaggnnnnnnnnnnnnnnnnnnnnnngaaggagac
agagattatcgctttgctccagtggaaaaccgagataaccttaacagaccatctccagta
gatgtcagagattctgttggacgaccaccagttgatccaagggagggtataggaaggcct
ccagcagatggaagagaacacttcacaaggccacatgtagacatgagagaaaattttgga
agaccaggtatagataaccttggtcgaagagagcattttggtttcaattcagacaagcac
tgggggcagagaggagattatgatgaaagagagcaccatgccttccctgtttatggtggc
cctaaaggcttccatgaagacagagagaggtttcggcatgtaaactatagatttgagagc
agaagtggtcccagttggaatagaggatttgaacaagatgctcacagagattttgatgac
cgcagaagaccctgggaaagacagagggatagggatgacagagattttaatttttgcaga
gaaattaatgggaacaggtttggaagagacagaatgtcaaacaactggatcccccctcca
catccacgggtttttgaatattttgatggggccacttcccaacgcaaagctgatagtatg
ccccaggtaaatggtgaaaatacagagacagaaagtcaaccaccaactgcacaggtgcag
gacgatccagaactttatgaaaaactgacatcttccgtcgagataaacaaagagaagagt
gacacagaagctgatatagaaagtgaaccagtggtagaaagcacagaaactgaggggaca
taa
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