KEGG   Dryobates pubescens (Downy woodpecker): 104306450
Entry
104306450         CDS       T08526                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
dpub  Dryobates pubescens (Downy woodpecker)
Pathway
dpub03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dpub00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104306450 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dpub03041]
    104306450 (SNRNP40)
Spliceosome [BR:dpub03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104306450 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104306450 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_SCAP ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR19_1st eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WDR54 WD40_like WD_LRWD1 Beta-prop_Nup120_160 PROPPIN PD40 KNTC1_N
Other DBs
NCBI-GeneID: 104306450
NCBI-ProteinID: XP_009905715
LinkDB
Position
Unknown
AA seq 283 aa
MPQCCPLLLSCHALTQLFCCLPQGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASA
GFDRLILLWNVYGDCENFATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERV
KRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDT
SDQIISGGIDNDIKVWDLRQNKLTYSMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDV
RPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADR
NT seq 852 nt   +upstreamnt  +downstreamnt
atgcctcagtgttgccccttgctcctctcatgccatgccctaacccagctcttctgctgt
ctcccccagggcccaccccgctgctcctccctgcaggcccccatcatgctgctctcaggg
catgaaggagaggtttactgctgcaagttccaccccaatggcaacaccctggcctctgct
ggctttgacaggctcatcttgctgtggaacgtctatggggactgcgagaacttcgccacg
ctgaaggggcacagtggagctgtcatggagctgcactacaacactgatggcagcatgctc
ttctcagcatccacagacaaaactgtggctgtgtgggacagtgagactggggagagagtg
aagaggctgaagggccacacctcctttgtgaactcctgctacccagccaggagaggaccc
cagctggtctgcacaggcagtgatgatggcactgtgaagctgtgggacatcaggaagaaa
gctgctgtccagacctttcagaacacctaccaggtgctggctgtgactttcaatgacacc
agtgatcagatcatatctggaggcattgacaatgacattaaggtgtgggacctgcgccag
aacaagctgacgtacagcatgcgggggcacgccgactcggtcaccggcctcagcctcagc
tcagagggctcctacctgctctccaacgccatggacaacacagttcgcatctgggacgtg
aggcccttcgcccccaaggagagatgtgtgaagatcttccaaggcaatgtgcacaacttt
gagaagaaccttctgaggtgctcctggtccccagatgggagtaaaattgctggaggctca
gctgacaggtga

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