Dryobates pubescens (Downy woodpecker): 104306870
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Entry
104306870 CDS
T08526
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dpub03036
]
104306870 (DICER1)
Chromosome and associated proteins [BR:
dpub03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104306870 (DICER1)
microRNA pathway
RISC loading complex
104306870 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
DEAD
ResIII
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104306870
NCBI-ProteinID:
XP_009906182
LinkDB
All DBs
Position
Unknown
AA seq
1921 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSSLEMTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLA
IQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIQKLEKMLKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLKELDEALTFLNDCNISVQSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELSYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKTFEEDLKTYKAIEKILRNKCSKSVDTNETE
TEPIVDDDDVFPPYVLRPDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISIPNSSLVENENYCKHSTIVVPENAAHQGANR
ASSAENHDQMSVSYRTLLNESPSKLQIDVSAELAAINGVTYNKNLANGNCDLVNRDFCQG
NQLNYCRQEIPVQPTTSYPIQNLYNIENQPKPSNECTLLSNKYLDGNANRSTSDGCPIMA
VTTSTSKAINLSKDTTDFEKNPSNGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYIVNQDKSNTDKWEKDEMTKENLLSNGKVDDYDDDEEDENLMWRLPKEETDFEDD
FLEYDQEHIKFIDNMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSLGNVQFSADFDDF
DYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWEGTLCATGENCNSEQKNLSPNS
VSASVANSEPSLYKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKA
YLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN
NTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEED
IEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEME
PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPN
S
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgct
tcctccccaatgggtccattttttggactaccatggcaacaagaagcaattcatgataac
atttatacgccgagaaaatatcaggttgaactgcttgaagcagctttggatcataataca
atagtctgcttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagatttcaacaaaaatgggaaaagaactgtattcttggtc
aactcagcaaatcaagttgctcagcaagtgtcagctgtcaggacacattcagatcttaaa
gttggagagtattcaagtttagagatgactgaatcatggacaaaagagaagtggagtcag
gaattctctaagcatcaggttctggttatgacatgtcatgttgctttgactgttttgaga
aatgagtatttatccctgtcaaatattaatcttctggtatttgatgagtgccatcttgca
atccaggatcacccataccgtgaaattatgaagatatgtgaggattatccatcatgtcct
cgaatcttgggattaacggcttccattttaaatgggaaatgcgatcctgctgagttagag
gagaagatccagaaactggagaaaatgttgaagagcaatgctgaaactgcaactgatttg
gtggtcttagacagatatacttctcagccatgtgagattgttgtagactgtggaccatat
actgataaaagtggcttgtatggaagattattgaaggaattggatgaagcgcttaccttc
ctgaatgactgcaacatatctgtacaatcgaaagaaagagattctaccttaatttctaag
cagatactgtcagactgtcgagctgtgttggttgttctgggaccctggtgtgcagataag
gtagctgggatgatggtgagagagctacagaagtatatcaaacatgaacaagaggagctg
cacaggaaatttttattgtttacagacactttcctaaggaaaatacatgcactctgtgaa
gagcacttctcgcctgcctcacttgacctgaaatttgtgaccccaaaagtgataaagctg
cttgaaatcttgcgcaaatataaaccgtatgagcggcagcagtttgaaagtgtggaatgg
tataacaataggaatcaggataattatgtgtcttggagtgattctgaagatgatgatgag
gatgaagaaattgaggagaaagagaagccagagactaattttccatcgccctttactaat
attttatgcggaattatttttgtggaaagaagatacacagcagttgttctaaataggttg
attaaagaagctggcaagcaagatccagaactgtcttacatcagtagcaattttataact
ggacatggcattggcaagaaccaacctcggaacaagcagatggaagtagagttcagaaaa
caggaagaggttcttagaaaatttcgagcacatgagaccaacctacttattgctactagt
attgtagaagagggtgttgacatcccaaaatgcaacttggtggtgcgttttgatttgccc
acagaataccgttcctatgtgcagtcgaaaggaagagctagagcaccaatctccaattac
attatgttagcagatacagacaaaatcaaaacttttgaagaagatcttaagacgtacaaa
gcaattgagaagatcctcagaaacaaatgctcaaaatctgttgacaccaatgaaaccgaa
actgaacccattgttgatgatgatgatgtgtttccaccctatgtgttgaggccagacgag
aacagtccaagagtcacaattaacactgctattggacacataaataggtactgcgctaga
ttaccaagtgatccattcacacacctagctcccaagtgtaaaacccgagaactacctgat
catacgttttactctactctctacctgccaatcaactcacctctccgagcttcaattgtt
ggtcctccaatgagttgtgcaagactggctgagagagttgtagctcttatttgctgtgaa
aaactacacaaaattggtgaactggatgatcatttgatgccagttggtaaagaaacggtt
aaatatgaggaagagcttgatttacatgatgaagaagaaaccagtgttccaggaaggcca
ggctctacaaaacgaagacagtgctatcctaaagctattccagaatgtttgagggatagc
tatcccaaacctgatcagccctgttacctgtatgtaataggaatggtgttaacaactcct
ctacctgatgagctcaacttcaggagaagaaagttatatcctcctgaggatacaacaagg
tgttttggcatattgacggccaaacctatacctcagattcctcactttcctgtgtatact
cgctctggagaggtaacgatatctattgagcttaagaaatctggtttcactctgtctctg
caaatgcttgagctgataacgcgactgcatcagtacattttttcgcatattcttcgtctt
gagaaacctgcactagagttcaaacctacagaagctgattcagcctattgtgttctacct
cttaatgttgttgatgactccagcactttggacattgactttaagtttatggaagacatt
gagaaatctgaggcacgtacaggcattcccagtacccaatatacaaaagaaatgcctttt
attttcaagttagaagattaccaggatgcagttatcattccacggtatcgaaattttgat
cagcctcatcgattctatgtagctgatgtatacactgatcttactccactcagtaaattc
ccatcccctgaatatgaaacttttgctgagtattataaaacaaagtataaccttgacctt
acaaatctcaaccagccactactggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaagggaaaggcacttccactaagcagtgctgagaagaga
aaagcaaagtgggaaagcttgcagaataagcagatactggttccagagctctgtgctatc
catcctattccagcatcattgtggagaaaagcagtttgcctccccagcatactttatcgc
ctgcactgcctgttgacagcagaggaactaagagctcagacagccactgatgctggtgta
ggggttaaatcacttcctgcagatttcagatatcctaacttggactttggatggaaaaag
tctattgacagcaaatccttcatctctattcctaactcctctttagtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataga
gcctcttctgcagaaaaccatgaccaaatgtctgtgagttacagaacattgctcaatgag
tcacccagtaaactccaaattgatgtctcagcagaacttgcagcaattaatggtgttact
tataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaagga
aatcagctgaattattgcaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaacattgagaaccagcccaagcccagcaatgaatgtactctactgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccataatggca
gtgaccaccagtacttcaaaagctattaatctttcaaaagacacaacagattttgaaaag
aacccttccaatgggtactcctcaaaaactcttggtcctaatcctggtctcattcttcaa
gctttgactctatcgaatgctagtgatggatttaatctggagcggctagaaatgcttggt
gattcatttttaaagcatgccatcactacatacttgttttgcacttaccctgatgctcat
gagggacggctgtcatatatgagaagcaaaaaagtcagcaactgtaacttgtatcgcctt
ggaaaaaagaaaggactgcccagtcgtatggtggtatcgatttttgatccccccgtcaat
tggcttcctcctggctacatagtaaaccaggacaagagcaacactgacaagtgggagaaa
gatgaaatgacaaaggaaaacttgttgtctaatggtaaagttgatgattatgatgacgat
gaagaggatgaaaacctaatgtggagattacccaaggaagaaacagattttgaagatgat
tttctggagtatgatcaggagcatatcaaattcattgataatatgttaatgggatctggg
gcttttgtgaagaaaatttctctttctcacttttcaaccactgattcaaactatgaatgg
aaagcgcccaaaaagtcatctctgggtaatgttcagttttcagcagattttgatgatttt
gactatagctcctgggatgctatgtgctatctggatcccagcaaggctgtggaagaggat
gattttgtagtgggcttctggaatccatcagaagaaaactgtggtgttgatgcaggaaaa
cagtctatctcatacgacttgcatacagagcagtgtattgctgacaaaagcattgcagac
tgtgtggaagccctgttgggctgctatctgaccagctgtggtgaaagagctgctcagctc
ttcctgtgttcactggggctcaaggtgctccctgtaattaaaaagactgattgggagggc
actttgtgtgctaccggagagaattgcaacagtgagcagaaaaatctttcaccaaactct
gtttctgcttctgtagctaattcagagccttctctgtataaagacctggagtatggctgt
ttgaagattccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccctaaatcac
cttatttctggttttgagaactttgagaagaaaataaactacagttttaagaacaaggct
taccttctacaggcatttactcatgcctcataccattataatactattactgattgttac
cagcgtttagaattcctgggagatgcaattttggactacctcataaccaagcacctttat
gaagacccaaggcaacattctccaggagttcttactgacctgcgatctgctttagtcaat
aataccatttttgcatcattagctgtaaagtatgactaccacaagtacttcaaagctgtc
tctcctgaactgtttcatgttattgacgactttgtgcagtttcaaatggaaaagaatgaa
atgcaaggaatggattctgagctccgaagatctgaagaagatgaagaaaaagaggaagac
attgaagtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatg
gatagtggaatgtctttggaaatggtttggcaagtgtactatccaatgatgcggccatta
atagaaaaattttctgctaatgtgccccgttccccagtgcgagagttgctggaaatggag
ccagaaacagccaaatttagtcctgcagaaagaacttatgatggaaaggtcagagtaaca
gtggaagttgtaggaaagggaaagttcaaaggtgttggcagaagctacaggattgccaaa
tctgcagctgcaagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaac
agctga
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integrated database retrieval system
