Dryobates pubescens (Downy woodpecker): 104306918
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Entry
104306918 CDS
T08526
Symbol
RBBP6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dpub04121
]
104306918 (RBBP6)
Enzymes [BR:
dpub01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104306918 (RBBP6)
Ubiquitin system [BR:
dpub04121
]
Ubiquitin ligases (E3)
U-box type E3
104306918 (RBBP6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-CCHC
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-RING_5
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
104306918
NCBI-ProteinID:
XP_009906234
LinkDB
All DBs
Position
Unknown
AA seq
1777 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHISLCDLKRQIMGREKLKAADCDLQITNAQTKEEYTDD
NALIPKNSSVIVRRIPIGGVKATSKTYVISRTEPVSGTSKAIDDSSASISLAQLTKTANL
AEANASEEDKIKAMMTQSGHEYDPVNYMKKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDK
NFESVPRIKKSTGIPRSFMMEVKDPNTKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLP
EDPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESEEHTCPTCH
QTDVSPDALIANKFLRQAVNNFKNETGYTKRLRKQIQQQQQQQQQQQQQQQQPPPPPPPP
PPPPLMRQTITRNLQPLMRPAMARQQDPLMIPLASLASRSAALSSLGPGQAPGLPVNPNS
VLVSDLPPAVSLLRGEKPDGPFRDPDTVLPPALMSADLSKTSSLSISSLLEEKGYQVPVL
RQPAIPSLLGPQGQSIPTTGHPMRAGTLRSAGGRPGWELSNRGRLHSERSQRTQAPALPA
SSPVFVPVPPPPLYPPPPHALPLPPGVPPPQFPPQFPPGQPPSAGYSVPPPGYPPAPANI
SSAWVPAAVPAGHSNTIPTTQAPPLSREEFYREQRRLKEEEKKKSKLDEFTNDFAKELME
YKKIQKERRRSFSRSKSPYSASSYSRSSYTYSKSRSGSSRSRSYSRSFSRSHSRSYSRSP
PYPRRGKGKSRNYRSRSRSHGYHRSRSRSPPYRRYHSRSRSPAFRGQSPTKRTLPQGEGE
REYFNRYREVPPYDMKAYYGRSVDFRDPFEKERYREWERNYREWYEKFYKGYAVGAQPRP
PVSRENFSPDRFGPPGTRRENSPYARGRREDYPGGQSHRTRNIAGNYPEKPGRESHGIKD
PTKSKEKEVENPLGDSKGNKHKKHRKRRKGDENEGFPSAELLEGARKPRETVPAEDVKTD
SLFMLPSRDDATPVRDEPMEADSIAFKPVSEKEKKEKDKPKAKVEKTKRKAEAAAPPKKD
TAVKPAKASQEKVDTDREKSPRAEPPAKKTKEELPKTDSVKTSSSQKDEKALGTPRKVHP
KATKDHPETRPAKEEKAKKDHPKETKSEKPSNKEDKSKKPAEKSKPSDAKPEKRKRKADE
KVDKEHEATSAKTSKPESAESKTSPKGKLEPDGDKGERTPEKDKSAFLNNPAKKIKLNRE
TGKKIVSTENLPPGKEPAEKPEPSSSKVKQEKTKGKARRKVTAADGTSSTLVDYTSTSST
GGSPVRKAEEKPDTKRTVIKTMEEYNNDITAPAEDVIIMIQVPQSKWDKDDFESEEEDIK
TTQVPTSIGKPASVIKNVSAKAPNPIKHSEKELEPLEKLQKAVKEASYESAQHEAKSSKS
SASTEKGKAKDRDHPLPDKDASEKRKIGTQPEKDHSERAAEQGNGKGVSQSSKDGRSSEK
HDAGRGATTKDFTPNRDKKSEHDGSREHSSSKRREEKSESARRKESPSRTRDSAAAQKSK
PREERAEPSKKGAGEAKRSSYSPSRERKQAEHKAAHDSKRAAEEHKPPEKNPAKEKEKHV
PEVKKKEKEKEPSGNKPPAKQESPDVKSEKENLPGQNDKSVVKPKPQASSSSRLSSDLTR
ETDEAAFVPDYNESDSESNLSAKEEEAAGKAPKEPKEKAVEKAKEEPAAPAAVEQPEAAP
SQSSPSVSRSRSQSPSESQTRSHSSSASSGESQDSKKKKKKKEKKKHKKHKKHKKHKKHL
GNETELEKSQKHKHKKKKSKKSKDKEKDDQKVKSVPT
NT seq
5334 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgcgtgcattacaagttctcctcgaagctcaactatgatacggtcaccttcgac
ggcctccatatctccctgtgcgacctcaagcgccagatcatgggccgagaaaagctgaag
gcggccgactgcgacctgcagataaccaacgcgcagaccaaagaagagtacacggatgac
aatgctttgattcccaagaactcatcagtgatcgtgaggagaatccccattggaggagtc
aaagccaccagcaaaacatacgtcataagccgaactgagccagtgagtggaacatcaaaa
gcaattgatgactcttctgcatctatttctctggcccagcttactaagactgccaatctg
gctgaagccaatgcttccgaggaagataaaattaaagctatgatgacacagtctggccat
gaatatgatccagtcaactacatgaagaaacccttgggcccacctccaccatcgtatact
tgcttccgctgtgggaaacctggccactacataaagaactgcccaacaaatggggacaaa
aattttgagtctgttcctagaattaaaaagagcacagggattcccaggagcttcatgatg
gaggttaaagacccaaacaccaagggtgctatgctgaccaacaccggcaaatacgcgatc
ccgaccatcgacgcggaagcttatgctataggcaagaaggaaaagcctccctttttacca
gaggatccatcatcctcctcagaagaagatgatcctattccagatgagttgctgtgtctc
atctgtaaggacatcatgacagatgcggttgttattccctgctgtggaaacagctactgc
gatgagtgtattagaacagcactgctggaatctgaggagcacacgtgtccaacgtgtcat
caaacagatgtctctccagatgctctcattgccaacaagttcctccgccaggctgtgaac
aacttcaaaaatgaaactggctacacgaagaggctccgtaagcagattcagcagcaacag
caacaacaacagcaacagcagcagcagcaacagcagccaccacctccaccaccacctcca
cctccaccgcccctgatgagacaaacgataacgcgcaacctgcagccgctgatgcggcca
gccatggccaggcagcaggatcccctcatgatcccgctggcttctctggcctctcgttca
gctgctttgtcgtccctgggccctggtcaggcacctgggctgccagtaaatcccaattcc
gtccttgtctctgatctccctccagcagtgtccctcctccgtggtgaaaagcccgatgga
ccttttcgtgatcctgatactgttttacctcctgctctgatgtctgctgacctttctaaa
acttcctctctgtcaatcagcagtttattggaagagaagggttatcaggttcccgtgcta
aggcagccagcaataccaagtcttctgggccctcaaggacaatccatacccacaactggt
caccccatgagagcgggcacccttcgctcggcaggtggcagaccaggctgggagctttca
aatcgaggacgcctgcacagtgaacgttcccaaaggactcaggccccagcactaccagca
tcatcaccagtctttgtgcctgtgcctccacctcccttgtatcctccaccaccccacgca
cttcctcttccacccggggtaccaccaccacagtttcctcctcagtttccacctggccaa
cctccgtctgctgggtactctgtcccccctccaggataccccccagctcctgcaaacata
tcatcagcttgggtcccagcagcagtaccagcggggcactcaaacaccatcccaacgaca
caagcacctcccctctctagggaggagttttacagagagcagcggagactgaaagaggag
gaaaagaaaaagtccaaacttgatgagtttacaaatgattttgctaaggaattgatggaa
tataaaaagattcaaaaggagcgtaggcgttcgttttccaggtccaagtctccctatagc
gcctcgtcctactccagaagctcctacacctactccaagtcgcgctcgggctcctcacgc
tcgcgctcctactcgcgctccttcagccgctcccactctcgctcctactcgcgctccccc
ccgtacccccgcagaggcaaaggcaagagccgcaactaccgctcccgctctcgctcccac
ggctaccaccgctcccgctccaggtccccgccctacaggaggtaccattcgcgctccagg
tcgccagccttcagaggccagtctcccaccaagcggactctgccgcaaggggaaggggag
cgggagtacttcaacagatacagggaagtgcccccctacgatatgaaggcttactatggc
agatccgttgacttccgagacccctttgagaaggagagataccgagagtgggaacggaac
tacagagagtggtacgagaagttctacaagggctacgcggtcggcgcccagcctcggcct
ccagtaagcagagagaacttctctccggataggtttggtccgcctgggaccagacgagag
aactccccctatgctcgcgggcgcagggaggattatcctggtgggcagagccacagaact
cgtaacatagctgggaattaccctgaaaaacctgggagagagagccatggcatcaaagat
cctacaaaatcaaaggagaaggaggtggaaaatcccctgggagacagcaaaggaaataag
cataaaaagcacaggaagaggagaaaaggggatgagaacgaggggttccccagtgccgag
ctgctagaaggcgccagaaagccaagagagacggttccagcagaggatgtgaaaacagac
tccctgttcatgctgcccagcagagatgatgccacccccgtgagggatgagcccatggaa
gcagattctattgctttcaaacccgtgtctgaaaaggagaagaaggagaaggacaagcca
aaagcaaaggttgagaagacaaagcgaaaagcagaagcagctgctcctccgaagaaggac
actgcagtaaaaccagcaaaagcttcccaagagaaggtggacactgaccgcgagaaatct
cctcgagcagaacctcctgccaaaaaaaccaaggaggagctgccaaagacagacagtgtt
aagacatcttcctctcagaaggacgagaaggctcttggtaccccgcgcaaagttcaccca
aaagccacgaaagatcacccggaaaccagaccagccaaggaggagaaggccaagaaggac
catccgaaggaaaccaagtcggagaagccctccaacaaggaggacaagtcaaagaaacct
gctgagaaaagcaaaccttctgatgccaaacctgagaaaaggaaaaggaaggcagatgaa
aaggtggataaagagcatgaggccacttctgcgaagacctcgaaaccagaaagcgcggag
tcaaagacgtcgccaaaggggaagcttgaacccgacggtgacaaaggtgagcggactccg
gagaaggataaatctgcttttctcaacaaccctgcaaagaagattaaactgaacagagaa
actggcaaaaagattgtgagtacagagaacctgccgccggggaaagagcctgctgagaaa
cctgagcccagcagcagcaaagttaaacaagagaagaccaaggggaaagccagaagaaaa
gtaactgcggctgatggaaccagttcaacccttgtggattacaccagcaccagctccact
ggaggaagccctgtcagaaaggctgaagagaagccagataccaaacgaactgtcatcaag
accatggaggagtacaacaatgacatcacagcccctgctgaggatgtcatcatcatgatc
caggtccctcagtccaagtgggataaagatgactttgagtctgaggaggaggacattaaa
actacccaggtgcccacaagcatagggaaacccgccagcgtgatcaaaaacgttagtgca
aaggcaccaaaccctatcaaacacagtgaaaaggagctggagcccctggagaagctgcag
aaggctgtgaaggaggcgagctacgaaagcgcccagcacgaggccaaaagctccaaaagc
tctgcctcgaccgaaaagggcaaagccaaagaccgagatcatcctttgccagacaaggac
gcctccgagaagaggaagatcggtactcagccagagaaggaccactcggaacgggcagct
gaacaaggcaatgggaaaggcgtttctcaatcttccaaagacggcagatcctcggagaag
cacgacgccggccgcggggccaccaccaaagacttcacccccaaccgcgacaagaagtct
gagcacgacggcagcagggagcactccagctccaagcgcagggaggagaagagcgagtcg
gccaggaggaaagagtccccctctcgaaccagggactctgcggcggcgcagaagagcaag
ccgagggaggagcgggcagagccctccaagaaaggtgctggagaggccaagaggagcagc
tacagcccctcacgtgagcgcaagcaggccgagcacaaggcagctcacgactccaaacgt
gcggcggaggagcacaaacctccagagaagaacccggcaaaagagaaggagaagcacgtc
cctgaggtgaagaagaaggagaaagagaaggagcccagtggtaataaaccccctgcgaag
caggagtcacccgacgtcaagagcgagaaggagaacctgcctgggcagaacgacaaaagc
gtggtgaagcccaagcctcaggccagcagctcctcacggctctcctcagacctcaccaga
gagactgacgaggctgcctttgtgccagactacaacgagagcgacagcgagagcaacctg
tcggccaaagaggaggaggctgcgggaaaggctccgaaggagcccaaggagaaggctgtg
gagaaggcaaaggaggagccggccgcgcctgctgcggtggagcagcctgaagcagccccg
agccagagcagccccagcgtcagccgcagccgcagtcagagcccatccgagagccagacc
cggagccacagcagcagcgccagctccggggagagccaggacagcaagaagaagaagaag
aagaaagagaagaagaagcacaagaagcacaagaaacacaagaagcataagaaacacctg
gggaacgaaacggagttggaaaagagccaaaaacacaaacacaagaagaagaagtccaag
aagagcaaagataaagagaaggacgaccaaaaagtgaaatctgtccccacgtag
DBGET
integrated database retrieval system
