Dryobates pubescens (Downy woodpecker): 104307326
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Entry
104307326 CDS
T08526
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpub03016
]
104307326 (RTCB)
Enzymes [BR:
dpub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104307326 (RTCB)
Transfer RNA biogenesis [BR:
dpub03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104307326 (RTCB)
Prokaryotic type
tRNA splicing ligases
104307326 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104307326
NCBI-ProteinID:
XP_009906674
LinkDB
All DBs
Position
Unknown
AA seq
445 aa
AA seq
DB search
AGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGF
DINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDW
SLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIY
NEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARI
ASAEGQDYLKGMAAAGNCSFXSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1340 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggtggctttttgcctgctatgaaacagattgggaatgtggctgcattgcctggca
ttgtgcatagatcaataggtcttccagatgtccattctggctatgggtttgccattggca
acatggctgcctttgatatgaacgatcctgaagcggtggtttcaccaggtggtgtcggat
ttgacatcaactgcggtgtccgcttactacgtacaaatctggatgaaagtgacgtgcagc
ccgtgaaggagcagcttgcccaggctatgtttgaccacattcctgttggtgtcggctcca
aaggcgtcatccccatgaatgccaaggatttggaagaggcactagagatgggtgtggact
ggtctctccgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaa
gaatgctgcaggctgaccccaacaaggtctcctcaagagcaaagaagaggggcctgcctc
agctgggaaccctgggagcaggaaaccattatgccgagatccaggttgtggatgacatct
acaacgagtatgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatga
tccacagtggcagcagagggctgggccaccaggttgccacagatgctttggtggctatgg
aaaaagctatgaaacgggacaagatcatagtgaacgatcgccagctggcgtgtgccagga
ttgcctccgcagagggacaggattacttgaagggaatggcagctgctgggaactgctcct
ttntctcttctatgacttttctaacaagacaggcctttgccaaagtcttcaacacaaccc
cagatgaccttgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagc
agcatgtagtggatggaaaggagcgcactctgctggtgcacagaaagggatcaaccaggg
ccttccctccacaccatcctcttattgctgttgattatcaactgactggacagcctgttt
tgatcggtgggactatgggcacctgtagctatgttcttactggcacagagcaaggcatga
ctgagacctttggaactacctgtcatggagctggtcgtgcgctgtctcgagccaaatctc
gacgcaacttggactttcaggatgtgctggacaagctggctgacatgggcattgccatcc
gtgttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaatgtgacag
atgtggttaacacctgccatgcagctggcatcagcaagaaagccattaaactgagaccta
ttgctgttataaaaggctag
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