Dryobates pubescens (Downy woodpecker): 104307826
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Entry
104307826 CDS
T08526
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub04137
Mitophagy - animal
dpub04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104307826 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
104307826 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104307826 (VCP)
03009 Ribosome biogenesis [BR:
dpub03009
]
104307826 (VCP)
04131 Membrane trafficking [BR:
dpub04131
]
104307826 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dpub04147
]
104307826 (VCP)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
104307826 (VCP)
Ribosome biogenesis [BR:
dpub03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
104307826 (VCP)
Membrane trafficking [BR:
dpub04131
]
SNARE
SNARE associated proteins
Others
104307826 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
104307826 (VCP)
Exosome [BR:
dpub04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104307826 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
TsaE
NB-ARC
ResIII
Viral_helicase1
NACHT
Sigma54_activat
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
104307826
NCBI-ProteinID:
XP_009907223
LinkDB
All DBs
Position
Unknown
AA seq
802 aa
AA seq
DB search
MHSKVDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLKGKKR
REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVE
GITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHC
EGDSIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY
GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID
ELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFD
REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR
KKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVGEVPQVTWEDIGGLED
VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG
PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQI
LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS
PVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEE
DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPS
QGTGGGSGGNVYSEDNDDDLYG
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgcactctaaagtggatgacttatcgactgctattctgaagcagaagaataggcctaat
cggttaattgttgatgaagccatcaacgaagacaacagtgttgtgtcactgtcccaggca
aaaatggacgaactgcagctcttcagaggagacactgtcctgctaaaaggaaagaagagg
agagaagcagtgtgcattgttctgtcagatgacacctgctcagatgagaagattcgcatg
aatagggttgttcgcaacaacctgagagtgcgcctgggggacgtgatcagcatccagcct
tgcccagatgttaagtatggcaaacgtatccatgtgctgccaattgatgacactgtagaa
gggatcacaggaaacctttttgaggtctatctcaaaccatactttctggaggcatacaga
cccatcaggaaaggtgacatcttcttggtgcgtggaggcatgcgtgctgtggaattcaaa
gtggtggagaccgatccaagtccatactgtatagtggctccagacacagtgatccactgt
gaaggagactccattaaaagagaggatgaagaggagtcactgaatgaagtgggttatgat
gacattgggggctgccggaagcagctggctcaaatcaaagaaatggtggaacttcccctc
cgacaccctgcactcttcaaggccataggggtgaagcctccacgtgggattctgctgtat
ggtcctcctggcactggtaaaacactgattgcccgagcagtggccaatgaaactggagct
ttcttcttcctgatcaatggtcctgagatcatgagcaagctggctggtgaatcagagagc
aacctaaggaaagcctttgaagaagcagagaagaatgctcctgctatcatcttcattgat
gaactggatgccattgctcctaaaagagagaagacgcatggagaagtggaacgtcgcata
gtgtctcagctgttgactcttatggatggactgaaacagcgagcacatgtgattgttatg
gcagctaccaacagacctaacagcattgacccagcactcaggagatttggtcgttttgac
agagaggtagatatcggtatcccagatgccactgggcgcctggagatcttgcagatccac
acgaaaaacatgaaactggctgatgatgtggatctggagcaggtggcaaacgagacccat
gggcatgttggtgctgacttggctgctctttgctcagaagctgctcttcaggccatcaga
aagaagatggacctcatagaccttgaagatgaaactattgatgctgaagtgatgaactca
ctggctgtgaccatggatgacttcaggtgggctctgagccagagcaacccttctgctctt
cgggaaactgtgggggaggtgccacaagttacctgggaagatattggtggtctagaagat
gtgaagagagagctccaggagcttgtacagtaccctgtggagcacccagacaagttcctc
aaatttggtatgaccccatcaaaaggggttctgttctatgggccacctggctgtggtaag
accctgctggccaaagccattgccaatgaatgccaggcaaacttcatttccatcaagggg
ccggagttgctcactatgtggtttggcgagtctgaagccaacgtgcgcgagatctttgac
aaggcccgacaagcagccccttgtgtgctcttctttgatgagctggactccattgcaaag
gctcgaggcgggaatatcggtgatggtggtggtgctgcagaccgtgtcatcaaccagatc
ttgacagagatggatggcatgtccaccaagaagaacgttttcatcattggtgccaccaac
aggccagacatcattgacccagccatcttgcgccccggccgcctggatcagctcatatac
atcccgctgcctgacgagaagtcccgggttgctattcttaaggccaacctgaggaaatca
ccagtggccaaggatgttgacctggattttctggccaagatgaccaatggcttttcgggg
gctgacctgacggagatttgccagcgtgcctgtaaattggctatccgtgaatccattgag
agcgagatcaggcgagaacgtgagaggcagaccaacccttctgccatggaggtggaggag
gatgacccggttcctgagatccgcagggatcactttgaggaggccatgcgctttgctcgc
cgctccgtcagtgacaacgacatcaggaaatacgagatgtttgcacagactcttcagcaa
agccggggctttggcagcttcaggttcccgtcaggtaaccagggcggtgctggtcctagc
caaggcacaggaggtggcagcgggggcaacgtgtacagtgaagacaatgatgatgatctc
tacggttaa
DBGET
integrated database retrieval system
