Dryobates pubescens (Downy woodpecker): 104307846
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Entry
104307846 CDS
T08526
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104307846 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpub03041
]
104307846 (DHX38)
Enzymes [BR:
dpub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104307846 (DHX38)
Spliceosome [BR:
dpub03041
]
Complex C
Other components
Step II factors
104307846 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
Microtub_bd
SRP54
DUF6449
AAA_16
AAA_30
AAA_7
Motif
Other DBs
NCBI-GeneID:
104307846
NCBI-ProteinID:
XP_009907246
UniProt:
A0A093JAH9
LinkDB
All DBs
Position
Unknown
AA seq
1241 aa
AA seq
DB search
MAAASEESLHRLAGTSLEAEAGGLVLRNRSAAAEQHIFKAPAPRASLLGLDVLAAQKRRE
REEEAAGGKRSRVSSYKDWEEGRDEVGSSEEDDEEDTSRSGRSTRKDRHYRSVHVETPSY
TGGVSEEFWERSRQREKERREHGVFASSKEEKDRKKERSRDRDHDRKRDREERDRSRHSS
RSERDGSSERSSRRGEPESPRHRPKDAATPSRSSWEEDDGGYSSVRRSQWESPSPLPSYR
DSERSHRSSSLRDTDRRDRDRSVRSKYSDKTPLPTPSYKYNEWADDRRHLGSTPRLSRGR
GRQGDGEEGIAFETEEELWRGRGQWEQAVPLPPQQADRDWYMMDEGYDEFHNPLAYSSEE
YVKKREQHLHKQRQKRISAQRRQINEDNERWETNRMLTSGVVHRIEVDEDFEEDNSAKVH
LLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKRAQHK
HWELAGTKLGDIMGIKKEEEKDEMVTEDGKVDYKTEQKFAEHMKEKSEASSEFAKKKSIL
EQRQYLPIFAVQQELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPR
RVAAMSVAKRVSEEMGVRLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDNY
SAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPG
RTFPVDILFSKTPQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEE
LEKAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYC
KLKVFNPRIGMDALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEI
QRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLM
VEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPES
DHLTYLNVYLQWKNNNYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDW
DVVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTT
KEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRAR
REEQERRNPLGSARSTKIYTPGRKEQGEPLTPRRTPARFGL
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcgagcgaggagtcgctgcaccggctggctgggacgagcctggaggccgag
gccggtggtctggtgctgcggaaccggagcgctgccgccgagcagcacattttcaaggcg
ccggcgccacgggcctctttgctgggcttggacgtgttagccgcccagaagcggcgggaa
cgcgaggaggaagcggccggtgggaagaggtcccgggtctcctcatacaaggactgggag
gagggccgtgacgaggtgggcagttctgaagaggacgacgaggaggacacttcccggagc
ggccggagcactcgcaaggacaggcattaccgttctgtccatgtggaaactccctcctac
acagggggtgtcagtgaggagttttgggaacgcagcagacagcgggaaaaggagcgtcgg
gaacatggtgtctttgcttcctccaaggaggagaaggaccgaaagaaggaacgcagcagg
gatcgggaccatgaccgtaaacgggaccgtgaggagcgggacagaagtcgtcacagcagc
agatcggagagagatggctcatcggagcggagcagcaggaggggtgagccagagagcccc
agacatcgtcccaaagatgcagccacaccatctcgctccagctgggaggaagatgatggt
ggttacagcagtgtgcgccgctcgcagtgggaatctccttcacccctgccctcctatcga
gactcggagcgcagccaccgatcatcatctctgcgggacacagaccggagagaccgtgac
aggtctgtgaggagcaagtactctgataagacgccattgcccactccctcctataagtac
aatgagtgggctgatgaccggagacacctggggtccactccacggctatccagagggaga
ggacggcaaggagacggagaggaaggcattgcctttgagacagaggaagagctgtggagg
ggcagggggcagtgggagcaggctgtgcctctcccccctcagcaagctgaccgggactgg
tacatgatggatgagggctatgacgagtttcacaaccccttggcctactcctccgaggag
tacgtgaagaagcgggagcagcacctgcacaagcagcggcagaagcgcatctcagcacag
cggcggcagatcaatgaggacaatgagcgctgggagacgaatcggatgctgaccagtggc
gtggtccatcggattgaggtggatgaagattttgaggaagataactctgctaaagtgcat
ctcttggtgcacaaccttgtgccccctttcctagatggaaggattgtcttcaccaagcag
ccggagccagtcatccctgtcaaagatgccacctcagatttggccatcatagcccgcaaa
ggcagccagttggtgcgcaagcacagggagcagaaggagcgtaagagggctcagcataag
cactgggagctggcaggcacaaaactgggagacattatggggatcaagaaagaagaggag
aaggatgagatggtgactgaagatggcaaagtggattacaagactgagcagaagtttgct
gaacacatgaaagaaaaaagtgaagccagcagtgagtttgccaagaagaaatcaatcctg
gagcagagacaatatctgcccatctttgctgtgcagcaggaactgctttccatcctcaga
gacaacagcattgtgattgtggtgggggagacagggagtgggaagacaacccagctgacg
cagtacctccacgaggatggctacacagactacggcatgatcggctgcacccagccccgc
agagtggcagctatgtcagtggccaagcgtgtcagtgaggagatgggggtgcgtctgggt
gaggaggtgggctacgccattcgctttgaggactgcacgtccgagaacacagtgatcaaa
tacatgacagatgggatcctcctgcgggagtcactgcgggaggctgacctggacaactac
agcgccatcatcatggatgaggcacacgagcgctccctcaacaccgacgtgctctttggc
ctgcttcgggaggtggtggcacgacgttcagatctcaaactcgtggtcacctcagccacc
atggatgcagataagtttgcatccttcttcgggaatgttcctattttccacattccgggg
cgcaccttccctgtggacattcttttcagcaagaccccacaagaggattatgtggaggct
gcagtgaagcaagccctgcaggtccatttgtctggtgctcctggagacatccttgtcttc
atgcctggccaggaggacatagaggtaacctcagagcaaattgtggagcaccttgaggag
ctggagaaggcacctgctcttgctgtcctgcctatctattctcagctaccctcagacttg
caggccaagatcttccagaaggctccagatggggtcaggaagtgcattgttgccactaac
attgcagagacctcactgacagtggatggcatcatgtttgtgattgattctggctactgc
aagctgaaggttttcaacccccgtataggcatggatgcgctgcagatctaccccatcagt
caagccaatgccaaccagagggctggccgagctggccgaacaggcccaggccactgcttc
aggctctacacccagagtgcctacaagaatgaactgctgacaaccacggtgcccgagatc
cagcgcaccaaccttgccaatgttgtgcttttgctcaagtctctgggtgtgcaagacctg
ctgcagttccacttcatggatcctccccctgaggacaacatgctgaactccatgtaccag
ctgtggatcctgggtgccctggataacacaggtggcctgacctcaacaggacgtctcatg
gtggagttcccactggatcctgcgctctctaaaatgctcattgtttcctgtgacatgggt
tgcagctctgagatcttgctcattgtctccatgttgtctgtgcctgccatcttctatcgg
cctaagggaagagaggaggagagtgaccaagtgcgggagaaatttgctgttcctgagagt
gatcacctgacttacctgaacgtttatctgcagtggaagaacaacaactattccacactg
tggtgcaaccagcacttcatccatgccaaggccatgcggaaggtgcgggaggtgcgtgcc
cagctgaaggacatcatggtgcagcagcggatgagcctggcatcctgtggcactgactgg
gatgtcgtcaggaagtgcatctgtgctgcctatttccatcaagctgcaaagctgaagggc
attggggagtatgtgaacatccgcaccggcatgccctgccacctgcaccccacaagctcg
ctgtttggcatgggctacacaccagactacatcgtgtatcatgagctggtcatgaccacc
aaggaatacatgcagtgtgtcactgctgtggatggagagtggctggcagagctgggcccc
atgttctacagtatcaaacatgctggcaagtcacggcaggagaaccgccgccgtgccaag
gaggaggtgtcagccatggaggaggagatggctctggctgaggagcagctccgtgcccgc
cgggaggagcaggagcgccggaaccccctgggcagtgcaagatctaccaaaatctacacc
ccggggcggaaggagcagggggagccactgacgccacgacgcaccccagcccgctttggc
ctctga
DBGET
integrated database retrieval system
