Dryobates pubescens (Downy woodpecker): 104307880
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Entry
104307880 CDS
T08526
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpub03041
]
104307880 (YTHDC2)
Enzymes [BR:
dpub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104307880 (YTHDC2)
Spliceosome [BR:
dpub03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104307880 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
nSTAND3
Ank_4
ATPase
AAA_22
PhoH
AAA_23
AAA_7
AAA_16
AAA_29
SRP54
Motif
Other DBs
NCBI-GeneID:
104307880
NCBI-ProteinID:
XP_009907284
LinkDB
All DBs
Position
Unknown
AA seq
1366 aa
AA seq
DB search
MEFPSSFTSTERAFVHRLCQSLGLISKSKGKGASRYLTIRKKDGSELTCAIMTCCLAPSS
KSTLWSFIQRFPVTSKERTELLPRLERGNSCTVEAESREVSKISGRLNNGIPQVPVKRGE
SEFDSFRQSLPVFEKQEEIIKVIKDNKVVLIVGETGSGKTTQIPQFLLDDCYKTGTPCRI
FCTQPRRLAAVAVAERVAAERREKIGQTVGYQIRLESRVSPKTLLTFCTNGILLRTLMAG
DGTLSTVTHIIVDEVHERDRFSDFLLIKLRDVLQNQMNLKLIVSSAALDADLFMRYFGNC
PLIHIQGRPFEVKEMFLEDILRTTGYTNKEMVKYKKEKQQEEKQQSTLSEWYSFQENNSK
LVSRKQKSVPSSTNECNLLDDGGDAVFNQLTEKDANCLEPWLIKEMDSCLSDIWLHKDID
SFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGADIHCKSSNGWMA
LDWAKRFGQTEVVDLLESYSASVEFGNLDESSLVQTNGSDLSVEDRELLKAYHHSFDDEK
VDLDLIMHLLYHICQRYDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHS
NMQTLDQKKVLKSPPSGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDALSCVTML
KMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLL
APVNCPVVDFLMKAPDPPPALIVRNAVQMLKTIDAMDSWEDLTELGYHLTELPVEPHLGK
MVLCGVVLKCLDPILTIACTLAYRDPFVLPALASQKRAAMLCRKRFTAGTFSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGADIKDVNT
NSENWAVVKAALVAGMYPNLVHVDRENLVLTAPKEKKVRFHPTSVLSQPQYKKIPPSNGQ
AAAIQALPTDWLIYDEMTRAHRIANIRCCSVITPVTVSLFCGPARLPSNALQEPSSLRVG
DGVSNDNSDSEIEDQTTANLSLLKLDEWLHLKLDPEAAGLLFQLRQKWHSLFLRRMRAPS
KPWSQVDETTVRAIIAVLTSEEQSAGLQQPSGIGQRPRPMASEELPLAPIWRSVNTRKSS
AETEFSDSFNAEKVSMKCTTPSIDQPKRYKEKNILRFKRTSDDRSDQSSVKSTDSSSYPS
PCASPSSSISGKGSKSPTRRPYTPVRYFIMKSSNLQNIDISQQKGVWSTTPSNEQKLNRA
FWASSLVYLIFSVQGSGHFQGFARMASEIGCEKSQDWGSAGFGGVFKVEWIRKESIPFQF
AHHLVNPWNDNKKVQISRDGQELEPQVGKHLLQLWDCIPFPGKKIN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccgtcctctttcactagtacagaaagagcatttgttcaccgactctgtcag
tctcttggactgatatctaaaagtaagggaaaaggagcaagtcgatacctgaccataagg
aaaaaggatgggtcagaactaacatgtgcaataatgacttgttgcttggctcccagttca
aaaagtactctttggagtttcattcagagatttcctgtcacaagtaaagaacgaacagaa
cttctgccacggttggagcgaggaaattcctgtactgttgaagctgaaagcagagaagtg
agcaagataagcgggcggcttaacaacggtatcccccaggttccagtgaaaagaggggaa
tcagagtttgattccttcaggcaatcactaccagtttttgaaaaacaggaagaaatcatc
aaagtaataaaggacaataaagttgttttgattgtaggggagactggatcaggaaaaact
actcaaatccctcagttccttcttgatgactgttacaaaactggaactccctgtcgtata
ttttgcactcagccaaggcgtttggcagctgttgctgtggctgaaagagtggcagcagaa
agaagagaaaagattggccagacggttggttatcagattcgactagaaagcagagtttct
ccaaagacactgttaacattttgcactaatggcatactgcttcgcacactaatggcggga
gacggcactctatcaactgtgacacacattattgtggatgaagtacatgagagggatagg
ttcagtgacttcctgttaataaaactgagagatgtgttgcaaaaccagatgaatttaaaa
ctaattgtttccagtgctgctttagatgcagatctcttcatgagatactttggaaattgt
ccactaatacacatacaaggaagaccttttgaagttaaagagatgtttttggaggacatt
ttacgaaccactgggtatacaaacaaagagatggtaaagtataaaaaagagaaacagcaa
gaagaaaaacagcaaagcactctcagtgagtggtattctttccaagaaaataatagcaaa
ctggtatctcggaaacaaaaatctgtcccaagttcaaccaatgagtgtaatctgttggat
gatggtggtgatgcagtatttaatcaactgactgaaaaagatgcaaattgccttgaacca
tggctaataaaagaaatggattcttgtctttctgacatctggttgcataaagatattgat
tcctttgctcaggtgttccatctcattttaaccgaaaatgtcagtgttgattacaggcac
agtgaaaccagtgcaactgcactaatgattgcttcagggagaggctttctgagtcaagta
gaacaactgatcagtatgggagctgatattcactgcaaatcatccaatggctggatggct
ttggactgggccaagcgctttggacagacagaggttgttgacctgttggagtcctacagt
gcttcagtggagtttggaaatctggatgaaagctccctagtccaaacaaatggtagtgac
cttagtgtggaggacagggaactgttgaaagcatatcatcacagttttgatgatgaaaaa
gtggacctggacctgattatgcacttgctttatcatatctgtcagagatatgatgctgga
gcaattttaatatttcttcctggatatgatgagatagttagcctgagggatcgtattctt
tttgatgacaagagatttgctgataatgctcacagataccaagtttttatgcttcattca
aatatgcagactttggatcagaagaaggtgcttaaaagtccaccttctggcatccgcaaa
ataattctttctactaatattgcagaaaccagcataactgtcaatgatgttgtatttgtt
attgactcaggcaagatgaaagagaagtcttttgacgcgctgagttgtgttacaatgcta
aaaatggtgtggatttcaaaagcaagtgctatccagagaaaaggcagggctgggcgctgt
cagcctggagtctgttttcgtctcttcagcaggctccggtttcagaatatgttggaattt
cagaccccagaacttctaagaatgccacttcaggaactttgtttacacacaaaacttctg
gctccagttaattgtcccgttgttgactttcttatgaaagctcctgatcctccaccagct
ttaattgtgagaaatgctgtgcaaatgcttaagaccatagatgccatggactcttgggaa
gatctcactgaacttggttatcatctcactgaattaccagtagagccacaccttggtaaa
atggtcttgtgtggtgttgttttgaagtgcctggatcctattctcactattgcgtgcact
cttgcatatcgagacccttttgtcctacctgcgttggcctctcaaaagcgtgcagccatg
ctgtgtagaaaacgttttactgcaggaacatttagtgaccatatggcacttctcagggct
ttccaggcatggcagaaggcacgtagtgatggctgggagagagccttctgtgaaaagaac
tttctgtctcaagccacaatggaaatcatcataggaatgagaacgcagttgcttggccag
cttagagcttcaggttttgttagagccagaggaggagctgacattaaagatgttaatact
aactctgaaaactgggctgtagttaaagctgccttggtggctgggatgtaccccaattta
gtgcatgtagacagagaaaacttggttttgactgcaccgaaggagaaaaaagtacgattt
catcctacctctgttcttagtcaacctcagtataagaagattcccccatcaaatgggcaa
gctgcagccattcaggcactacctacagactggcttatatatgacgaaatgacgagagct
cacaggatagcaaacatcagatgctgttctgtcataacacctgtcactgtgtcactattc
tgtggaccagctagattaccaagtaatgctttgcaggaaccttcgtccctccgagtgggg
gatggggtatctaatgataacagcgatagtgagatagaggaccaaacaactgctaatttg
tcactactgaagctagatgaatggctccatctcaaactggaccctgaagctgctggtttg
ctgtttcaactcagacagaagtggcatagcttatttctgcgtcgcatgcgagctccttct
aaaccatggtctcaagttgatgaaacaactgtacgagcaattatagctgttttaactagt
gaagaacagtcggcgggtttgcaacagccttcaggaattgggcagagaccgagacctatg
gcttctgaagaacttcctttagcacctatttggaggtcagtcaacactagaaaaagctca
gcagaaactgaattctctgactcctttaatgctgaaaaagtttcaatgaaatgtacaact
ccttcaattgaccagccaaaaaggtacaaagaaaaaaacattctgcgtttcaaacgaact
tcagatgacaggtcagatcaatcatcagtgaagtctacagacagcagtagctatcctagc
ccctgtgctagtccttcttcttcaatatctggaaagggttctaaatcgcctacacggaga
ccatatacaccagttcgatactttataatgaaaagtagcaatctgcaaaacattgatatt
tctcaacagaagggtgtatggtctactacaccaagtaatgaacaaaaactaaatcgagcc
ttttgggcaagcagcctggtttacttaatattttctgttcagggatctggacactttcag
ggttttgccagaatggcttcagagataggttgtgaaaaaagccaagactggggatctgct
ggttttggaggtgtgtttaaggtggagtggatccgaaaagaaagcattccttttcagttt
gctcaccacttggtcaacccttggaatgacaataagaaagtacaaataagcagagatggc
caggagctggaaccacaagttggaaagcatttgctgcagctttgggactgtattcctttt
ccaggaaaaaaaatcaactga
DBGET
integrated database retrieval system
