Dryobates pubescens (Downy woodpecker): 104307938
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Entry
104307938 CDS
T08526
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dpub04121
]
104307938 (PDZRN3)
Enzymes [BR:
dpub01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104307938 (PDZRN3)
Ubiquitin system [BR:
dpub04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
104307938 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
104307938
NCBI-ProteinID:
XP_009907359
LinkDB
All DBs
Position
Unknown
AA seq
784 aa
AA seq
DB search
MGCSLCTLQKQEEQYKLLYEVCQVNGKDLSRATHEQAVEAFKTAKEPIVVQVLRRTPRTK
AFTSPHDCQLVDVGTQTDITFEHIMALSKMGSPTPPVSVLDPYLLPEDCYILHPSVHEYY
DSNDYMGGIHQEMDRDELELEEVDLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSI
AAKDGRLREGDRIIQINGIEVQNREEAVALLTREDSKNISLLVARPEIQLDEGWMDDDRN
DFLDDLHMDMLEEQHHQAMQFTASMLQQKKHEEDGGTTDTATVLSNQHEKDSGVGRTDDS
TRNDESSEQENNADDHTTSSNTLGSQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLG
IPVDECERFRELLELKCQVKSASPYSLYYHNSTLDMSKSDQESVDKELEMLNEELRNIEL
ECLNIVRAHKMQQLKDQYREPWMLHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSA
YNTGESCRSTPLTLEISPDNSLRRTAEGVSCQGSEGAVAYNVSQKNLFASSESHESSTAK
CHASAKDPDLAKQLESKERKASDGSKSPTHGQKPSGSYVSPYHHSPYKHAHIPAHAQHYQ
SYMQLIQQKSAVEYAQSQMSLVSMCKDFNSGQSEPRMEWKVKVRSDGTRYITKRPVRDRL
LRERAIKIKEERSGMTTDDDAISEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDC
LKEQQGAEEKKEMNIIELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLS
VTTV
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgggatgcagtttgtgcactctacagaagcaagaggagcagtacaagttactgtatgaa
gtttgtcaggtcaatgggaaggatttatctagagcaacacacgagcaggcagtggaagca
ttcaaaacagccaaggagcccattgtggtgcaggtcctgagaagaactccacgcaccaaa
gccttcacctctcctcatgactgtcagctggttgatgtgggcacccagacagatatcact
tttgaacacatcatggctctgagcaagatgggctcacctactccacctgtctctgtgcta
gacccatacctcctgcctgaagactgctacattctccatccatcagtgcatgaatattat
gactcaaacgactacatgggaggaattcatcaagaaatggaccgagatgagttggaatta
gaggaagtggatttacacagagtgaacagccaggacaagcttggccttactgtatgctac
agaacagatgatgaagatgacatgggtatttatgtgagtgagattgatcccaacagtatt
gcagcaaaagatggtcggctccgagaaggggatcgcattatccagatcaatggcatagag
gtacagaaccgagaggaagctgtggcacttctcaccagggaggacagcaagaacatctcc
ttacttgttgcaagaccagaaattcagctggatgaaggatggatggatgatgacagaaat
gattttctggatgacttgcacatggacatgttagaggaacagcaccaccaggcaatgcaa
tttactgccagcatgcttcagcagaagaagcatgaggaggatggaggtaccacagataca
gccactgtgttatctaaccagcacgagaaggacagcggtgtggggcgcacagacgacagc
actcgcaacgatgagagctcggagcaggagaacaatgctgatgatcacaccacctcctcc
aacactttagggagccagaagaagctgacctacagtcacgacaccctgggaagtggcgac
atgcagttcagcaacgagtcctttatctcggccgactgcacagatgtcgacttcctcggc
atccctgtagatgaatgcgaacggttccgagaactgctggaactgaagtgccaggtgaag
tctgccagcccctacagtctgtattaccataacagcacactggacatgagcaaaagtgac
caagaaagtgttgacaaagagctggagatgctgaacgaggaactgcgcaacatcgagctg
gagtgcctgaacattgtaagagctcacaaaatgcagcagctgaaggatcagtaccgggag
ccctggatgctacacaacagcgggttccgaaactacaacacaagcatcgatgtccgcagg
cacgagctctctgacatcacggagctccccgagaagtctgacaaggacagctccagtgcc
tacaacacaggcgagagctgccggagcacaccactgacgctggagatctcccctgacaat
tctctgcgcagaactgcagaaggcgttagctgtcaaggtagcgagggggcagtggcgtat
aatgtctcccaaaagaatttatttgctagctcagaaagtcacgaatccagcactgctaag
tgccacgcctctgctaaagatcctgaccttgccaagcagctggaaagcaaggaaaggaaa
gccagtgatggaagcaaaagccctactcacggtcaaaaaccttctggctcctatgtgtcc
ccgtaccatcactctccatacaagcacgctcatattcctgcccatgcacagcactatcag
agctacatgcagctgatccagcagaagtcagcagtggagtatgcacagagccaaatgagc
ctggtgagtatgtgcaaagactttaattcaggccagagcgaacccaggatggagtggaaa
gtcaaggtcagaagcgatgggacccgctacattaccaagaggccagtcagagacagactg
ctgagagaacgtgccataaagattaaggaggagcgcagcggaatgactaccgatgacgac
gccatcagtgaaatgaagatgggccgttactggagcaaggaggagcggaagcagcatcta
gtgaaagccaaggagcagaggaggaggcgtgagtttatgatgcagagcaggttagattgc
ttaaaggaacagcaaggtgcagaagaaaagaaagagatgaatattattgaactaagccac
aaaaaaatgatgaagaagagaaataaaaaaatatttgacaattggatgacaatccaggaa
ctgctaacccacggaacgaagtcaccggacggcacgcgggtgtacaattccttcctgtca
gtgactactgtgtaa
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integrated database retrieval system
