Dryobates pubescens (Downy woodpecker): 104308099
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Entry
104308099 CDS
T08526
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104308099 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpub03021
]
104308099 (CPSF3)
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104308099 (CPSF3)
Transcription machinery [BR:
dpub03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104308099 (CPSF3)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104308099 (CPSF3)
U7-dependent histone pre-mRNA processing factors
104308099 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
104308099
NCBI-ProteinID:
XP_009907529
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MILIPPPAPPHNQGPVKLWLILLTLISLCSGAGQEVGRSCIILEFKGRKIMLDCGIHPGL
EGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLL
SDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMI
EIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVH
DIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVN
AMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTD
KRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIR
ALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVM
GSLADKKPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLS
YQLQKLTGDVEEIEIQQKPALKVFKTITVIQEPGMVVLEWVANPANDMYADTVITVILEV
QSNPKIQKAAVQKISKKVDMDVYRKRMEIMLQDMFGEDCVSSKDGSVLCITVDGKTANIS
LDTRTVECEPGSEEDESLREMVELAAQRLYDALSPVC
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgattctgattccccctccagccccaccccacaaccagggcccagttaagctctggtta
attttgctgactttgatctccctttgcagtggtgctggccaagaggtaggaaggtcctgc
atcattctggagttcaaaggaaggaagataatgctggattgtgggatccacccaggcctg
gaaggaatggatgctcttccttacattgatttgatagatcctgctgagattgatctcctc
ctcatcagccatttccatctagatcactgtggggctttgccctggttcctgcagaagaca
agcttcaaagggaggacattcatgactcatgccacaaaagccatttacagatggctgctt
tcagactatgtcaaggtcagcaacatctcagcagatgacatgctctacacagaaacagac
ctggaggagagcatggacaagatcgagaccatcaacttccatgaagtgaaagaggtggca
ggaatcaagttctggtgctaccatgcaggccatgtgctgggggcagccatgttcatgatt
gagatagctggagtgaagctcttgtacacaggagacttctcaagacaggaggacaggcac
ctgatggcagctgagattcccaacatcaaacctgatatcctgatcattgagtccacctac
ggcacccacatccacgagaagcgggaggagcgcgaggccaggttctgcaacaccgtccac
gacatcgtcaacaggggaggccgaggcctcatccctgtctttgccctgggcagagctcag
gagctgcttctcatcctggatgagtactggcagaaccaccctgagctccatgacatcccc
atctactacgcctcctccctggccaagaagtgcatggccgtgtaccagacctacgtcaac
gccatgaacgacaagatccgcaagcagatcaacatcaacaaccccttcgtcttcaagcac
atcagcaacctgaagagcatggatcactttgatgacattggccccagtgtggtgatggcc
tccccagggatgatgcagagtggcctctccagggagctgtttgagagctggtgcacagac
aagaggaatggagtcatcatagcaggctactgcgtggagggaaccctggccaagcacatc
atgtctgagcctgaagagatcacaaccatgtcagggcagaagctgcccctcaagatgtct
gtggattacatttccttctctgctcacacagattaccagcagaccagtgagttcatccgg
gccctcaagcctccacacgtgatcctggtccatggagagcagaacgaaatggccaggctg
aaggctgccctgatcagggagtatgaggataatgatgaagtccacatagaggttcacaac
cccaggaacactgaagctgtcaccctgaacttcagaggagaaaaacttgccaaggtgatg
gggtctttagctgacaagaaaccagagcaaggacagaggatttctggaatcctggttaaa
aggaattttaactaccacatcctgtctccatgtgacctctccaattacactgacctggcc
atgagcacggtgacccagacccaggccatcccctacacaggccctttcaacctgctctcc
taccagctgcagaagctgacaggggatgtggaagaaatagagatccaacagaagccagcc
ctgaaggttttcaagaccattactgtgatccaggagccaggcatggtggtccttgagtgg
gtggcaaaccctgccaatgacatgtatgcagacactgtcatcacagtgatcctggaggtg
cagtccaaccccaaaatacagaaagctgcagtacagaaaatttccaagaaggttgacatg
gatgtgtacaggaagaggatggagatcatgctgcaggacatgtttggagaggactgtgtg
agctccaaggatggctctgtgctgtgcatcacggtggatgggaagacggcaaacatctcc
ctggacacaaggacggtggagtgcgagccggggagcgaggaggatgaatccctccgcgag
atggtggagctggctgcacagaggctctatgatgccctcagcccagtctgctga
DBGET
integrated database retrieval system
