Dryobates pubescens (Downy woodpecker): 104309002
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Entry
104309002 CDS
T08526
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03082
ATP-dependent chromatin remodeling
dpub03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104309002 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104309002 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dpub01009
]
104309002 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpub03021
]
104309002 (SMARCB1)
03036 Chromosome and associated proteins [BR:
dpub03036
]
104309002 (SMARCB1)
Protein phosphatases and associated proteins [BR:
dpub01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104309002 (SMARCB1)
Transcription machinery [BR:
dpub03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104309002 (SMARCB1)
SWI/SNF complex
104309002 (SMARCB1)
Chromosome and associated proteins [BR:
dpub03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104309002 (SMARCB1)
PBAF complex
104309002 (SMARCB1)
SWI/SNF complex
104309002 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
104309002
NCBI-ProteinID:
XP_009908561
LinkDB
All DBs
Position
Unknown
AA seq
349 aa
AA seq
DB search
MFRGSLYKRYPSLWRRLATVEERKKIVASSHENQRSHSPRRYHGYTTLATSVTLLKASEV
EEILDGNDEKYKAVSISTEPPTYLREQKAKRNNQWVPTLPNSSHHLDAVPCSTTINRNRM
GRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPE
MFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLV
DQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTV
EIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtttcggggctccctgtacaagagatacccctcgctctggagacggctggccaccgtg
gaggaaaggaagaagatagtggcctcttcacatgaaaatcagcgatctcacagccccaga
agatatcatggctataccacgttagccactagtgtgacgctgctgaaggcctctgaagtg
gaagagatcttggatggcaatgatgagaagtacaaggcagtgtctatcagcacagaacct
cccacctacctcagagaacagaaggcgaagaggaacaaccagtgggtgccaaccctgccc
aacagctctcaccacctggacgcagtgccgtgctccaccaccatcaacaggaaccgcatg
ggcagggataagaagagaacattcccactgtgctttgatgaccatgacccagcagtgatc
catgagaatgcatcccagccagaggttctggttccaatcaggctcgatatggaaatcgat
gggcagaaactccgagatgcatttacgtggaacatgaatgaaaagctaatgaccccagaa
atgttctctgagattctttgtgatgacctggatttgaatcccctgacctttgtccctgct
attgcctctgccatccgacagcagatcgagtcctacccaaccgacagcatcctggaggat
cagtcagaccagcgagttattattaagctaaacattcatgtagggaacatctcccttgta
gaccagtttgagtgggacatgtcagagaaggagaattcaccagagaagtttgccttgaag
ctgtgctcagagcttggcctgggtggggagtttgtcactaccattgcctacagcatccgg
ggacagctgagttggcaccagaagacatatgccttcagcgagaaccctttgccgacggtg
gaaatcgccatccgcaacacgggggatgctgaccagtggtgccccctgctggagaccctc
acagatgccgagatggagaagaagatcagagaccaggacaggaacacaaggcgcatgaga
cgcttggccaacactgctccagcctggtaa
DBGET
integrated database retrieval system
