Dryobates pubescens (Downy woodpecker): 104309042
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Entry
104309042 CDS
T08526
Symbol
POLE
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03030
DNA replication
dpub03410
Base excision repair
dpub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104309042 (POLE)
03410 Base excision repair
104309042 (POLE)
03420 Nucleotide excision repair
104309042 (POLE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dpub03032
]
104309042 (POLE)
03400 DNA repair and recombination proteins [BR:
dpub03400
]
104309042 (POLE)
Enzymes [BR:
dpub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104309042 (POLE)
DNA replication proteins [BR:
dpub03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
104309042 (POLE)
DNA repair and recombination proteins [BR:
dpub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
104309042 (POLE)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B_exo2
RNase_H_2
DNA_pol_B
Motif
Other DBs
NCBI-GeneID:
104309042
NCBI-ProteinID:
XP_009908605
LinkDB
All DBs
Position
Unknown
AA seq
2055 aa
AA seq
DB search
MPDPSPLRAFPRPQLPQLLGSRFKARRTAPSLPPLRAGLARRRQRLRFGSQRDANNSANA
EDSPEASGRDDGPALSALKRLERSQRTDQLDALFGFERPAEPCERTGWLINMHPTEVLDE
DHRPVSAVDYYFIQEDGSRFKVALPYKPYFYIATQKGCEREVSSFLSKKFQGRIAKLETI
PKEDLDLPNHLVGLKRNYIKLSFSTVDDLVRVRKEISPAVRKNREREQANDVYTAMLCSA
LSGGILSTEEEEGGCRKVASQLDNIVDMREYDVPYHVRLSIDLKIHVAHWYTVRYRGSSY
PPEISRRDELGEAPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIV
SEDIEDFEFTPKPEYEGPFCVFNEPDEAHLIQRWFEHVQETKPTIIVTYNGDFFDWPFVE
ARAAAHGMNMYQEIGFQKDSQGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLG
YDPVELDPEEMCRMATEQPQTLATYSVSDAVATYYLYMKYVHPFIFALCTIIPMEPDEVL
RKGSGTLCEALLMVQAYHANIIFPNKQEQEFNKLTGDGHLLDSETYVGGHVEALESGVFR
SDIPCRFKMNPAAFDFLEQQVEKTLRHAIEEEEGLPLDQVTNFQEVCEEIKGKLNSLKDV
PNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGANCQRRMTWQWRG
EFSDCLQGEFHRIQQQLETEKFPALCPEGAPRAFHQLAREEQAKYEKKRLAAPASRRRAR
WYSMEMAGIVCFTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKSTNAKK
PKVTISYPGAMLNILVKEGFTNDQYQELQDPASLTYTTRSENSIFFEVDGPYLAMILPAS
KEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLVKIFQSSVFEAFLKGSTLEEVYAS
VAKVADYWLDVLYSKAANMPDSELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLG
DQMVKDAGLSCRFIISKKPEGSPVTERAIPLAIFQAEPGVRRHYLRKWLKSPSLQDFSIR
AILDWDYYIERLGSTIQKIITIPAALQQVPIASKRKRVPAAEESQEASQDLELSQSWREI
LGSPPPLGTTKEERLLWLRFHQKKWELQARHRCIREALSKGLGSYLRRTARSILDLPWQI
VQIAETSQPGLFRLWALIGSDLHCIRLRIPRVFYVNQRVPKPEEGAAYRRVNRILPRSNL
VYNLYEYSVPEDLYQEHINEINADLSAPDIEGVYETQVPPLLRALIQLGCVCMVSRQLLR
HLAGREAETFDIEQLEMRSLAQFPYLEPGSIRHIYLYHSCQGSRALLGLFIPSQRKASVF
VLDKVRSNQMPSLSALFSAERGALLRRVGEELLPPRGARPGHRSGRRLRQHRGGGSKGAG
AQLLAQSPLLWLSPTARPDLGGKEADDNRLVMEFDERASVEINNPGCYSTVCLELDIQSL
AVNTVLQSHHINDMEGGSSMSISFDVIQQASLEDMVTGNQAAHLPASYDEAALCSNTFRI
LKSMVVSWVKEITQYHNVYADNQVIHFYRWLRSPCSLLYDPALHRTLHNMMKKLFLQLVA
EFRRLGSSVVYANFNRVVLCTRKRRIEDALSYMEYIIHSIHSKEIFHSLTISFSRCWEFL
LWMDPANYGGIKGRMDSRVHYGEQDTSKRQVLEEEKEDSEQEEEEVAAGEEEEEEGETNV
EELLENNWNIMQFLPQAASCQSYFLMIVSAYIVAVYHSMKEELRRSAPGSTPVKRRTSSQ
VSQELLRETGAMPGMIAFSQDYVANELTQSFFTITQKIQKKVTGSHSASEPSDLFPVLPG
SYLPLNNPALEFIKCVCKVLSLDANVTNQVGKLRRDLLRLIEVGEFSEAAQFRDPCRSYL
LPEVICSSCNFCRDLDLCKDPAAISQDGSVPPSWVCPNCQAQYDTAAIEAALVEALQKKL
MAFVLQDLVCQKCHGVKETHMPVYCSCAGDFALTISCQTFRDHISVFQSIAQHYGMAFLL
ETIKWLLCTSPQLQQ
NT seq
6168 nt
NT seq
+upstream
nt +downstream
nt
atgccggaccccagccccctgcgggcgttcccccggccgcagctcccccagctgctgggc
tccaggttcaaggctcgccggacagcgccgtccctgccgcccctgcgagctgggctggcg
agaaggaggcagcggctccggttcgggtctcaaagggatgccaacaacagcgcaaacgct
gaagattctcctgaggcgtctggtcgggacgatggccccgcgctgtccgctctcaagcgc
ctggagcggtcgcagcgcacggaccagctggatgcgctgttcggctttgagcggccggcg
gagccctgcgagcgaaccggctggctcatcaacatgcacccgacggaggtgctggacgag
gaccaccggccggtgagcgctgtggactactacttcatccaggaggatgggagccgcttc
aaggtggccctgccctacaagccctacttctacattgccacccagaagggctgtgagcga
gaagtgtcctccttcctctccaagaagttccaagggaggattgcaaagctggaaacgatc
cccaaagaagacttggacctgccgaaccacttggtgggcctgaagaggaactacatcaag
ctgtccttcagcaccgtggacgacctggtgagggtgaggaaggagatctcccctgccgtg
aggaagaacagagagcgcgagcaggccaacgacgtctacacagccatgctctgcagcgct
ctgagtggaggcatcctcagcactgaggaggaggagggaggctgcaggaaggttgccagc
cagctggacaacatcgtggacatgcgggagtacgacgtgccctaccacgtgcggctctcc
atcgacctgaagatccacgtggcacactggtacaccgtgaggtaccgaggcagctcctac
ccccccgagatcagccgcagggacgagctgggggaggctcctgatcctgtggttcttgcc
tttgacattgaaactaccaagctgcctttgaagtttcctgatgcagagacagaccagatc
atgatgatctcctacatgattgatgggcagggctacctgatcacaaacagggagattgtc
tctgaggacattgaagactttgagttcactcccaagccagagtatgagggccccttctgt
gtcttcaacgagccagatgaagctcatttaatccagaggtggtttgagcatgtccaggag
accaagcccaccatcattgtcacatacaatggagacttctttgactggccctttgtggaa
gcaagagcagcagctcatgggatgaacatgtaccaggaaattggattccagaaggacagc
cagggggagtacaaagcctcccagtgcatccacatggactgcctgaggtgggtgaagaga
gacagctacctcccagtgggaagtcacaacctgaaggcagcagctaaagccaagctgggt
tatgatccagtggagctggaccctgaagagatgtgcaggatggccacagagcagccccag
accctggccacctactcggtgtcggacgccgtcgccacctactacctgtacatgaagtat
gtgcaccccttcatcttcgccctctgcaccatcatccccatggagcctgatgaggtgctc
cggaagggctccgggacgctgtgtgaggctctgctgatggtccaggcctaccatgccaac
atcatcttccccaacaagcaggagcaggagttcaacaagctgacaggagatggccacctg
ctggactcagagacctacgtgggaggccacgtggaggccctggagtccggggtcttccgc
agcgacatcccctgccgcttcaagatgaatcctgctgccttcgacttcctggagcagcag
gtggagaagactctgcgccacgccatcgaggaggaggaggggctgcccctggaccaggtc
accaacttccaggaggtctgtgaggaaatcaaaggcaaactgaactccctgaaggatgtt
cccaacagaattgagtgtccccttatctaccatctggatgtgggggccatgtaccccaac
atcatcctgaccaacaggttgcagccctcagccatggtggatgaggccacttgtgctgcc
tgtgacttcaacaagccaggagccaactgccagcgccggatgacttggcagtggagagga
gagttcagtgactgcctgcagggcgagttccaccgcatccagcagcagctggagacagag
aagttccctgcgctgtgccccgagggcgcgccccgcgccttccaccagctggcccgcgag
gagcaggccaagtacgagaagaagaggctggcagcgcctgccagccgccgccgggctcgc
tggtactccatggagatggctggcatcgtgtgcttcaccggggcaaacatcatcacccag
gccagggagctgatagagcagattgggagacccctggagctggataccgatgggatttgg
tgtgtcctacccaacagcttcccggagaactttgtcatcaagtcaaccaatgccaagaag
ccaaaggtgaccatctcctacccaggtgccatgctgaacatcctggtgaaggaaggcttc
accaacgaccagtaccaggagctgcaggacccagcctcgctcacctacaccacgcgctcc
gagaacagcatcttcttcgaggtggatggaccctacctggccatgatcctcccagcctcc
aaggaggagggcaagaagctgaagaagaggtacgctgtgttcaacgaggatgggtccctg
gccgagctgaagggcttcgaggtgaagcgccgcggggagctgcagctggtgaagatcttc
cagtcctcggtgttcgaagccttcctgaagggcagcaccctggaggaggtctatgcctcc
gtggccaaggtggctgactactggctggatgtgctctacagcaaggctgccaacatgcct
gactcggagctcttcgagctcatctcggagaaccgctccatgtctcgcaagctggaggac
tatggggagcagaagtccacctccatcagcacagccaagcgcctggcagagttcctgggg
gaccagatggtgaaggatgcagggctgagctgcaggttcatcatttccaagaagccagaa
gggtctcctgtcaccgagagggccatccccctggccatcttccaggccgagcccggcgtg
cgcaggcactacctgcggaagtggctcaagagtccctcgctgcaggacttcagcatccgc
gcgatcctggactgggactactacatcgagaggctgggcagcaccatccagaagatcatc
accattcctgcagccctgcagcaggtgcccatcgccagcaagcggaagagagtccccgcg
gcagaggagagccaggaggcgtcccaggacctggagctgtcccagtcctggagagagatc
ctgggctcacctccacccctgggcaccaccaaggaggagaggctgctctggctgcgcttc
caccagaagaagtgggagctgcaggcccggcacagatgcatccgggaggccctctccaaa
gggctgggcagctacctgcgcaggacagcacgcagcatcctggacctgccctggcagatc
gtgcagatagctgagaccagccagcccgggctgttccggctgtgggcgctgatcggcagc
gacctgcactgcatcaggctccgcatccctcgcgtcttctacgtcaaccagcgcgtcccc
aagccggaggagggggcagcctacaggagggtgaacaggatcctgcctcgctccaacctg
gtttacaacctctatgaatactctgtccccgaggacctctaccaggagcacatcaacgaa
atcaacgcagacctctctgccccagacatcgagggggtctatgagacacaggtgccgccg
ctgctgcgtgcgctgatccagctgggctgcgtgtgcatggtcagcaggcagctgctccgg
cacctggcagggagagaggctgagaccttcgacatcgagcagctggagatgcgctcgctg
gcacagttcccctacctggagccaggaagcattcgccacatctacctctaccacagctgc
cagggcagcagggctctcctgggcctcttcatcccctcgcagcgcaaagcctctgtcttt
gtgctggacaaggtccgcagcaaccagatgccgagcctgagcgcgctcttctcggcggag
cgcggcgcgctgctgcgcagggtgggcgaggagctgctgccccccagaggggcccggccg
ggacacaggagcgggaggaggctgcggcagcaccgcggcggcggttccaagggcgccggc
gcacagctgctggcccagagccccctgctgtggctgtcgcccacggcccgcccggacctg
gggggcaaggaggctgatgacaaccgcctggtcatggagtttgatgagagagcctcggtg
gagatcaacaaccctggctgctactccacagtgtgtctggagctggacatccagagcctg
gctgtgaacacagtgctgcagtcccaccacataaacgacatggaaggaggctccagcatg
agcatcagcttcgatgtgatccagcaggcgtcgctggaggacatggtgaccgggaaccag
gctgcccacctcccggccagctacgacgaggcagccctctgctccaacaccttcaggatc
ctgaagagcatggtggtgagctgggtgaaggagatcacgcagtaccacaatgtctatgca
gacaaccaggtcatccacttctaccgctggctgcgctcgccctgctccctgctctacgac
cccgcgctgcaccgcacgctccacaacatgatgaagaagcttttcctgcagctggtggcc
gagttccggcgcctgggctcctcggtggtttatgccaacttcaaccgcgtggtgctgtgc
accaggaagcggcgcatcgaggacgccctcagctacatggagtacatcatccacagcatc
cactccaaggagatcttccactctctgaccatctccttctcccgctgctgggagttcctg
ctctggatggatccagccaactatggaggcatcaaggggagaatggattctcgtgtgcac
tacggggagcaggacaccagcaagaggcaagtgttggaggaggagaaggaggatagtgaa
caagaggaggaggaggtggcagcaggggaagaagaggaggaggaaggagagacaaacgtg
gaggagctgctggagaacaactggaacatcatgcagttcctgccccaggctgcctcctgc
cagagctacttcctgatgatcgtgtcagcctacatcgtggccgtgtaccacagcatgaag
gaggagctgcggcgcagcgcccccgggagcaccccagtgaagaggaggaccagcagccag
gtgtcccaggagctgctgagggagacaggggccatgcctggcatgatcgccttctctcag
gactacgtggccaacgagctcacccagagcttcttcaccatcacccagaagatccagaag
aaggtgactggttcccacagtgccagtgagccctctgacctcttcccagtgctgcctggc
tcctacttgccactcaacaacccggctctggagttcatcaaatgtgtctgcaaggtgctc
tccttggatgccaacgtgaccaaccaggtgggcaagctgcgccgggacctgctgcgcctc
atcgaggtgggagagttctccgaggcggcgcagttccgggacccctgccgctcctacctg
ctgccagaggtcatctgcagcagctgcaacttctgcagggacctcgacctctgcaaggac
cctgctgccatctcccaggatgggtcagtgccacccagctgggtctgccccaactgccag
gctcagtatgacaccgctgccatcgaagctgcgctggtggaagccctgcagaagaagctg
atggcctttgtgctgcaggacctggtgtgccagaagtgccatggtgtgaaggagactcac
atgcctgtgtactgcagctgtgctggagactttgccctcaccatctcctgccagaccttc
agggaccacatcagcgtcttccagagcattgcccagcactatggcatggccttcctgctg
gaaaccatcaagtggctgctgtgcaccagcccccagctccagcagtga
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integrated database retrieval system
